| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,052,157 – 15,052,257 |
| Length | 100 |
| Max. P | 0.993116 |
| Location | 15,052,157 – 15,052,257 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.57 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -14.01 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.23 |
| Mean z-score | -3.07 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.993116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15052157 100 - 22224390 AGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCUUUAUAUACCCCACAUAAAUAUGUAUGCUACCCUAUACCCUACCCUAUAUAUAUAUAUAUAGCUACUU .(((........)))((((.(((((.(((((.....))))).))))).....))))....................(((((((....)))))))...... ( -19.80) >DroSec_CAF1 7983 94 - 1 AGCCUCUCAUUUGGCUCGUUUGUGGUGUGUGCCUUAUAUACCCCACAUAAAUAUGUAUGCGCAAGCAUACACUACCCUAUAU------AUAAAGCUACUU ((((........)))).((((((((.(((((.....))))).)))).......(((((((....)))))))...........------...))))..... ( -27.20) >DroEre_CAF1 7566 93 - 1 AGCCUCUCAUUCGGCACAUUUGCGGUCUGUGCUUUAUAUACC-CACGUAAAUAUGUACGAGUAUGUGUGGGGUACCCACUAU------AUAUAGCUACUU (((.......((((((.((((((((..((((.....))))..-).))))))).))).)))(((((((((((...))))).))------)))).))).... ( -23.80) >consensus AGCCUCUCAUUUGGCACAUUUGUGGUGUGUGCUUUAUAUACCCCACAUAAAUAUGUAUGCGAAAGUAUACACUACCCUAUAU______AUAUAGCUACUU .(((........)))..((((((((((((((...))))))))....))))))..(((((......))))).............................. (-14.01 = -13.13 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006