Locus 5794

Sequence ID X_DroMel_CAF1
Location 15,028,524 – 15,028,623
Length 99
Max. P 0.672279
window9403

overview

Window 3

Location 15,028,524 – 15,028,623
Length 99
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 89.07
Mean single sequence MFE -23.30
Consensus MFE -18.32
Energy contribution -18.88
Covariance contribution 0.56
Combinations/Pair 1.26
Mean z-score -1.58
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.672279
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15028524 99 + 22224390
GUUGUCACUUGGAUUUAAGAUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA----ACGUAUUGCCGC
(((((.((((((((((........(((....))).((((.....)))).)))))))....)))))))).......((((((......----..)))))).... ( -20.00)
>DroSec_CAF1 46043 99 + 1
GUUGUCGCUUGGAUUUAAGCUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA----ACGCAUUGCCGC
(((((.((((((((((..((((((....)))))).((((.....)))).)))))))....)))))))).......((((((......----..)))))).... ( -27.60)
>DroSim_CAF1 49612 99 + 1
GUUGUCGCUUGGAUUUAAGCUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA----ACGCAUUGCCGC
(((((.((((((((((..((((((....)))))).((((.....)))).)))))))....)))))))).......((((((......----..)))))).... ( -27.60)
>DroEre_CAF1 47067 103 + 1
GUUGUCGCUUGGACUUAAACUGCAGCUCUGUAGCAGUUGUUACUCAUCAAAAUCCAAUCAGGCACAAUAUCUUAUCGAUACUCAAUUACUUACGUAUUGCCGC
(((((.((((((.....((((((.((...)).))))))(.....)............))))))))))).......((((((............)))))).... ( -17.80)
>DroYak_CAF1 47467 99 + 1
GUUGUCGCUGGGAUUUUAACUGCAGCUGUGCAGCAGUUGUAACUCAUUAAAAUCCAAUCAGGUGCAAUAUCUAAUCAAUACACAAUA----ACGCAAUGCCGC
((((.((((.(((((((((.((((((((.....)))))))).....))))))))).....))))))))...................----............ ( -23.50)
>consensus
GUUGUCGCUUGGAUUUAAGCUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA____ACGCAUUGCCGC
(((((.((((((((((..((((((....)))))).((((.....)))).)))))))....)))))))).......((((((............)))))).... (-18.32 = -18.88 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:33 2006