| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,018,906 – 15,019,002 |
| Length | 96 |
| Max. P | 0.847921 |
| Location | 15,018,906 – 15,019,002 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.28 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15018906 96 - 22224390 CCAAUAGAGGAGGCAUUAC------------CAUUACCAUCACCAAACGCCUCCAGACCCACCUGGACCACCUCGCCCACCUUGCCCACGCUGCCUCCUUCGAAUCGA ......(((((((((....------------....................(((((......)))))................((....)))))))))))........ ( -21.50) >DroSec_CAF1 36533 96 - 1 CCAAUAGAGGAGGCAUUAC------------CAUUACCAUCACCAAACGCCUCCAGACCCACCUGGACCACCUCGCCCACCUUGCUCACGCCGCCUCCUUCGAAUCGA ......((((((((.....------------....................(((((......)))))................((....)).))))))))........ ( -21.30) >DroEre_CAF1 37419 105 - 1 CCAAUAGAGGAGGCAUUACCCUUACCAUCACCGUCACCAUCAGCAAUCGCCUCCAGACCCA---GGACCACCUCGCCCACCUGGCCCACCCCGCCUCCUUCGAAUCGA ......((((((((..................(((.......((....)).....)))(((---((.............)))))........))))))))........ ( -22.32) >DroYak_CAF1 37584 105 - 1 CCAAUAGAGGAGGCAUCA---UUGCCAUUUCCAUUACCAUCACCAAUAGCCUGCGGAACCACCUGGACCAACUCACCCACCUUGCCCACUCCGCCUCCGUCGAAUCGA ......(((((((((...---.))))..........................(((((..((..(((..........)))...)).....))))).))).))....... ( -17.00) >consensus CCAAUAGAGGAGGCAUUAC____________CAUUACCAUCACCAAACGCCUCCAGACCCACCUGGACCACCUCGCCCACCUUGCCCACGCCGCCUCCUUCGAAUCGA ......((((((((.....................................(((((......))))).......((.......)).......)))))).))....... (-15.40 = -16.27 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:21 2006