Locus 5777

Sequence ID X_DroMel_CAF1
Location 14,973,331 – 14,973,447
Length 116
Max. P 0.947906
window9374

overview

Window 4

Location 14,973,331 – 14,973,447
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -30.25
Consensus MFE -16.20
Energy contribution -17.07
Covariance contribution 0.87
Combinations/Pair 1.00
Mean z-score -3.02
Structure conservation index 0.54
SVM decision value 1.38
SVM RNA-class probability 0.947906
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14973331 116 - 22224390
CUGGCAACUCUGCGGCUGCUAGGCCACCAAAUGGCUACACCAUAAAUACCAACUUUCGGUAUUUAAGCAACCCUGCGGACAAAAACUAUCGAUACUCGCGCAACGCGGCCACACUA
.((((...(((((((.((((.(((((.....)))))......((((((((.......))))))))))))...))))))).................((((...))))))))..... ( -36.00)
>DroSec_CAF1 641 116 - 1
CUGGCAACUUUGCGCCUGCUAAGCCACCAAAUGGCAGCACCAUAAAUACCAACUUUCGGUAUUUAAGCAACCCUGCGCAACACAACUAUCGAUACUCACGCAACACGGCCACACUA
.((((....(((((........((((.....)))).((....((((((((.......)))))))).(((....)))))....................)))))....))))..... ( -29.50)
>DroEre_CAF1 624 105 - 1
CUGGCAUCUCUCCACCUGCUAAAC-----------AACACUGUAAAUACCAGUUCUUGGUAUUUAAGCAACCCUUCGCAGCUGAACUAUCGAUAGUCGCGCUACGCGGCCACACUA
.((((...........((((..((-----------(....)))(((((((((...))))))))).))))......(((((((((.(((....)))))).)))..)))))))..... ( -24.20)
>DroYak_CAF1 643 116 - 1
CUGGCAUCUCUCCGCCUGCUAAACGUCCAAUUGGCAACUCCACAAAUACCAGUUUUCGGUAUUUAAGCAACCCUGCGCGGCAGAACUAUCGAUACUCGCGCAACGCGGCCACACUA
.((((...(((((((.((((((........)))))).......(((((((.......)))))))..(((....))))))).)))............((((...))))))))..... ( -31.30)
>consensus
CUGGCAACUCUCCGCCUGCUAAACCACCAAAUGGCAACACCAUAAAUACCAACUUUCGGUAUUUAAGCAACCCUGCGCAGCAGAACUAUCGAUACUCGCGCAACGCGGCCACACUA
.((((...........((((......((....))........((((((((.......))))))))))))...........................((((...))))))))..... (-16.20 = -17.07 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:08 2006