Locus 5767

Sequence ID X_DroMel_CAF1
Location 14,956,587 – 14,956,706
Length 119
Max. P 0.562049
window9359

overview

Window 9

Location 14,956,587 – 14,956,706
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -23.97
Consensus MFE -18.33
Energy contribution -17.57
Covariance contribution -0.75
Combinations/Pair 1.28
Mean z-score -1.46
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.562049
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14956587 119 - 22224390
AUAGUAUGAGGAAAAUGCAGAGUCAGCAAAGAACGAGCACUUGGAAAACAAGUGAUUUGUUUUUUUUUUAGAAUGCAUAAAAAAGUGGCAAAGCA-GAGAGUGCAUAAUGUCAAUGAAAC
..............(((((........((((((((((((((((.....)))))).))))))))))........))))).......(((((..(((-.....)))....)))))....... ( -25.99)
>DroSec_CAF1 737 119 - 1
AUAGUGUGAGCAAAAUGCAGAGUCAGCGAAGAACAAGCGCUUGGAAAACAAGUGAUUUGGUUU-UUUUUAGAACGCAUAAAAAAGUGGCAAAGCGUAAGAAUGCAUAAUGUCAAUGAAAC
...(((((.((.....))....((...(((((((...((((((.....)))))).....))))-)))...)).))))).......(((((..((((....))))....)))))....... ( -24.60)
>DroSim_CAF1 3516 119 - 1
AUAGUGUGAGCAAAAUGCAGAGUCAGCGAAGAACGAGCGCUUGGAAAACAAGUGAUUUGGUUU-UUUUUAGAACGCGUAAAAAAGUGGCAAAGCGUAAGAGUGCAUAAUGUCAAUGAAAC
......(((.((..(((((......(((((((((.(.((((((.....))))))...).))))-)))......(((........)))))....(....)..)))))..)))))....... ( -23.50)
>DroYak_CAF1 2935 116 - 1
AUAGUGUGCAGAAAAUGCAGAGUCAGUGAAGAACGAGCUGCUGGAAAACAAGUGAUUUGGUUA---UUUAGAACGCGUAAAAAAGUGGCAAAGCAG-AAAGUGCAUAAUGCCAAUGGGAC
....((((((.....(((.......((.....))..((..((.........(((.(((((...---.))))).))).......))..))...))).-....))))))...((....)).. ( -21.79)
>consensus
AUAGUGUGAGCAAAAUGCAGAGUCAGCGAAGAACGAGCGCUUGGAAAACAAGUGAUUUGGUUU_UUUUUAGAACGCAUAAAAAAGUGGCAAAGCAUAAGAGUGCAUAAUGUCAAUGAAAC
...((((........(((.......))).....((((((((((.....)))))).)))).............)))).........(((((..(((......)))....)))))....... (-18.33 = -17.57 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:55 2006