Locus 5728

Sequence ID X_DroMel_CAF1
Location 14,816,522 – 14,816,614
Length 92
Max. P 0.984088
window9296

overview

Window 6

Location 14,816,522 – 14,816,614
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 95.87
Mean single sequence MFE -23.40
Consensus MFE -22.00
Energy contribution -21.80
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.62
Structure conservation index 0.94
SVM decision value 1.96
SVM RNA-class probability 0.984088
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14816522 92 + 22224390
UUGUUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC
((((((......))))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... ( -23.72)
>DroSec_CAF1 10481 91 + 1
UU-UUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC
..-.(((((....)))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... ( -23.52)
>DroSim_CAF1 9721 92 + 1
UUGUUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC
((((((......))))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... ( -23.72)
>DroEre_CAF1 15465 92 + 1
UUGUUUGUUGUGAAACAACGAUUGGCGGUUGAUGUUGACGCUUAUAAUAUAUCAUUCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC
......(((.(((.....((((..(.(..((((((.............))))))..))..)))).(((((........)))))..))).))) ( -21.02)
>DroYak_CAF1 3085 92 + 1
UUGGUUGUCGUGAAACAACGAUUGGCGGUUGAUGUUGACGUUUAUAAUAUAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC
......(((.(((.....((((..(.((.((((((.............)))))).)))..)))).(((((........)))))..))).))) ( -25.02)
>consensus
UUGUUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC
....(((((....)))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... (-22.00 = -21.80 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:58 2006