| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,811,269 – 14,811,367 |
| Length | 98 |
| Max. P | 0.862418 |
| Location | 14,811,269 – 14,811,367 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 93.38 |
| Mean single sequence MFE | -30.83 |
| Consensus MFE | -29.27 |
| Energy contribution | -29.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14811269 98 + 22224390 AUCAAUGGCCACCUUUGAAA--AAAGGCCACUACCUGUGCCUG------UGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG .....((((((...(((((.--..(((((((.....)))....------.)))).....))))).....))))))..............(((((....)))))... ( -30.40) >DroSec_CAF1 5213 105 + 1 AUCAAUGGCCACCUUUGAAAA-AAAGGCCACUACUUGUGCCUGUGCCUGUGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG .....((((((...(((((..-..((((.((.....))))))(..(........)..).))))).....))))))..............(((((....)))))... ( -31.40) >DroSim_CAF1 4447 106 + 1 AUCAAAGGCCACCUUUGAAAAAAAAGGCCACUACCUGUGCCUGUGCCCGUGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG .(((((((...)))))))......((((.((.....)))))).....((((((((.((.......)))).)))................(((((....)))))))) ( -30.70) >consensus AUCAAUGGCCACCUUUGAAAA_AAAGGCCACUACCUGUGCCUGUGCC_GUGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG ......(((((...(((((.....(((((((.....)))...........)))).....))))).....)))))...............(((((....)))))... (-29.27 = -29.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:44 2006