Locus 5717

Sequence ID X_DroMel_CAF1
Location 14,800,841 – 14,800,931
Length 90
Max. P 0.839825
window9276

overview

Window 6

Location 14,800,841 – 14,800,931
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -19.18
Consensus MFE -11.22
Energy contribution -12.00
Covariance contribution 0.78
Combinations/Pair 1.17
Mean z-score -2.20
Structure conservation index 0.58
SVM decision value 0.75
SVM RNA-class probability 0.839825
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14800841 90 - 22224390
CGUUCUGUCCCAUCAUCCCAAUGCC-----CC-CAGAGCCGCCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU
.((((((...(((.......)))..-----..-)))))).((((.((((((--(((((((..((.....))..)))))))).......))))).)))) ( -22.71)
>DroSec_CAF1 36905 90 - 1
CGUCCUGUCCCACCAUCCCAAUGCU-----CC-CCGAGCCACCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGGGAGGGU
...........(((.(((((..(((-----(.-..))))..........((--(((((((..((.....))..))))))))).......))))).))) ( -22.30)
>DroSim_CAF1 25819 90 - 1
CGUCCUGUCCCACCAUCCCAAUGCC-----CC-CCGAGCCACCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU
.........................-----..-.......((((.((((((--(((((((..((.....))..)))))))).......))))).)))) ( -16.81)
>DroEre_CAF1 30818 91 - 1
CAUUCUGUUCCCCUAUUCCAAUUCC-----CCUCAGUGCCACCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU
........................(-----((((((((.....))))..((--(((((((..((.....))..)))))))))..........))))). ( -18.70)
>DroYak_CAF1 30222 98 - 1
CGGUCUGUCCCACUAUUCCAAUUCCUCCCUCCACAGAGCCAACCACUCAUUUUUUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU
.(((((((........................))))).))..((.(((((((((((((((..((.....))..)))))))))).....))))).)).. ( -20.86)
>DroPer_CAF1 43853 75 - 1
------GUCCUCCCAUCUGGUU--U-----GG-CGGAG-------CUCUUU--UUAUGGCUCGCUUCAAGUACGUCAUAAAAAUUAACACGAACGUAU
------.(((..(((.......--)-----))-.))).-------...(((--(((((((..((.....))..))))))))))............... ( -13.70)
>consensus
CGUUCUGUCCCACCAUCCCAAUGCC_____CC_CAGAGCCACCCACUCAUU__UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU
........................................((((.(((((...(((((((..((.....))..)))))))........))))).)))) (-11.22 = -12.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:40 2006