| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,630,491 – 1,630,610 |
| Length | 119 |
| Max. P | 0.815151 |
| Location | 1,630,491 – 1,630,610 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.63 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -24.08 |
| Energy contribution | -23.92 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1630491 119 + 22224390 AUAA-AAGGCAAGCGACGGAAGUCAAUAGAUUUUAUAGGUAUUGUGUCCCGAAAUAGGAGCAAUUCCCCCCGAUAAGUGCCGCAAAACGGCAUAAUAGGUGGAGCAAAGUGGAUAGUGAA ....-.......(((((....))).............((.(((((...((......)).))))).))((((.....((((((.....))))))....)).)).))............... ( -29.10) >DroSec_CAF1 25577 119 + 1 AUAA-AAGGAAAGCGACGAAAGUCAAUAGAUUUUAUAGGUAUUGUAUCCCGAAAUAGGAGCAAUUCCCCCAGAUAAGUGCCGCAAAACGGCAUAAUAGGUGGAGCAAAGUGGAUAGUGGA ....-.......(((((....))).............((.(((((.(((.......)))))))).)).(((..((.((((((.....))))))..))..))).))............... ( -27.30) >DroSim_CAF1 42087 119 + 1 AUAA-AAGGCAAGCGACGAAAGUCAAUAGAUUUUAUAGGUAUUGUGUCCCGAAAUAGGAGCAAUUCCCCCAGAUAAGUGCCGCAAAACGGCAUAAUAGGUGGAGCAAAGUGGAUAGUGGA ....-.......(((((....))).............((.(((((...((......)).))))).)).(((..((.((((((.....))))))..))..))).))............... ( -27.50) >DroEre_CAF1 26920 115 + 1 AUAAAAAGGCAAACGACGAAAGUCAAUAGAUUUUAUAGGUAUUGUGUCCCGAAAUAGGAGCGAUUCCCCCCGGUAAGUGCCGCAAAACGGCAUAAUAGGUGGAGCACAGUGGAUA----- ..............(((....)))...............(((((((..(((.....((((...))))..((.....((((((.....))))))....)))))..)))))))....----- ( -29.60) >DroYak_CAF1 29903 115 + 1 AUAAAAAGGCAAACGACGAAAGUCAAUAGAUUUUAUAGGUAUUGUGUCCCGAAAUAGGAGCAAUUCC-CCCGAUAAGUGCCGCAAAACGGCAUAAUAGGUGGAGCAAAGUGGAUAG---- ........((....(((....)))....................((..((......))..))..(((-.((.....((((((.....))))))....)).)))))...........---- ( -27.50) >consensus AUAA_AAGGCAAGCGACGAAAGUCAAUAGAUUUUAUAGGUAUUGUGUCCCGAAAUAGGAGCAAUUCCCCCCGAUAAGUGCCGCAAAACGGCAUAAUAGGUGGAGCAAAGUGGAUAGUG_A ..............(((....))).......(((((..(((((((.(((.......))))))))(((.((......((((((.....))))))....)).)))))...)))))....... (-24.08 = -23.92 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:03 2006