Locus 5696

Sequence ID X_DroMel_CAF1
Location 14,732,106 – 14,732,208
Length 102
Max. P 0.923783
window9248

overview

Window 8

Location 14,732,106 – 14,732,208
Length 102
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 93.71
Mean single sequence MFE -32.18
Consensus MFE -23.70
Energy contribution -25.14
Covariance contribution 1.44
Combinations/Pair 1.03
Mean z-score -3.27
Structure conservation index 0.74
SVM decision value 1.16
SVM RNA-class probability 0.923783
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14732106 102 - 22224390
GUUCAAUAUCCGUUCGAUAUCAGGUGUGUAAAGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA------------CACUGAUCGA
.............(((((....(((((((.(((((((((....)).))))))).((((........)))).(((((((....))))))))))------------)))).))))) ( -25.20)
>DroSec_CAF1 25181 112 - 1
GUUCAAUAUCCGUUUGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA--CACAAGCACACACUGAUCGA
..((((.......)))).(((((((((((..(((...(((((....)))))...)))......((((.(((.((((((....))))))))))--)))..)))))).)))))... ( -32.20)
>DroSim_CAF1 29216 112 - 1
GUUCAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA--CACAAGCACACACUGAUCGA
.............((((..((((((((((..(((...(((((....)))))...)))......((((.(((.((((((....))))))))))--)))..)))))).)))))))) ( -33.50)
>DroEre_CAF1 22049 111 - 1
GUUGAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGU-UGUCAAUUGGCAAAUACA--CACAACCACACACUGAUCGA
(((((((....)))))))((((((((((...(((...(((((....)))))...)))......((((.(((.(-((((....))))).))))--)))...))))).)))))... ( -32.70)
>DroYak_CAF1 24945 114 - 1
GUUGAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACACACACAAACACACACUGAUCGA
(((((((....)))))))(((((((((((..(((...(((((....)))))...)))......((((.((((((((((....))))))).)))))))..)))))).)))))... ( -37.30)
>consensus
GUUCAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA__CACAAGCACACACUGAUCGA
.............(((((....(((((((..(((...(((((....)))))...)))......(((.....(((((((....))))))).....)))....))))))).))))) (-23.70 = -25.14 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:15 2006