Locus 5694

Sequence ID	X_DroMel_CAF1
Location	14,729,223 – 14,729,315
Length	92
Max. P	0.786841

overview

Window 5

Location	14,729,223 – 14,729,315
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	97.62
Mean single sequence MFE	-20.92
Consensus MFE	-19.24
Energy contribution	-19.84
Covariance contribution	0.60
Combinations/Pair	1.00
Mean z-score	-1.37
Structure conservation index	0.92
SVM decision value	0.57
SVM RNA-class probability	0.786841
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14729223 92 + 22224390
ACCCGC-AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAACUCAUCGAUGCGGAUUAGCAUAUGGACAGAA
.....(-(((........))))..((((((((...(.(((.((((.((....((((.......))))..)).)))).))))..)))))))).. ( -21.50)
>DroSec_CAF1 22310 92 + 1
ACCCGC-AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCGGAUUAGCAUAUGGACAGAA
......-...((((....(.((((((((.(((((((......)))))))(....)...)))))))).).((((......))))))))...... ( -23.10)
>DroSim_CAF1 25951 92 + 1
ACCCGC-AACCCAUUCAAGUUGAGCCGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCAGAUUAGCAUAUGGACAGAA
......-...((((....(.(((((.((((((((((......))))))).....)))....))))).).((((......))))))))...... ( -19.50)
>DroEre_CAF1 19077 92 + 1
ACCCGC-AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCAGAUUAGCAUAUGGACAGAA
......-...((((....(.((((((((.(((((((......)))))))(....)...)))))))).).((((......))))))))...... ( -22.40)
>DroYak_CAF1 21950 93 + 1
ACCCGCCAACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCACAUCGAUGCAGAUUAGCAUAUGGACAGAA
....((((((........)))).))(((((((((((......)))))))...............(((..((((......)))))))))))... ( -18.10)
>consensus
ACCCGC_AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCAGAUUAGCAUAUGGACAGAA
..........((((....(.((((((((.(((((((......)))))))(....)...)))))))).).((((......))))))))...... (-19.24 = -19.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:12 2006