Locus 5687

Sequence ID X_DroMel_CAF1
Location 14,706,014 – 14,706,109
Length 95
Max. P 0.582426
window9236

overview

Window 6

Location 14,706,014 – 14,706,109
Length 95
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -26.75
Consensus MFE -25.11
Energy contribution -24.68
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.28
Structure conservation index 0.94
SVM decision value 0.10
SVM RNA-class probability 0.582426
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14706014 95 + 22224390
AGCUCGCCAUUUCUGUUGGCUG---------------UUGGGUGUUAAAGUGCAAUUAGUGCCCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG
..(((((((.......))))..---------------(((((..((((.......))))..))))).(((.((((.((((((.....)))))))))).))).....))). ( -26.80)
>DroSec_CAF1 24941 102 + 1
AGCUCGCCGUUUCUGUUGGCUG--------CUGAGCGUUGGGUGUUAAAGUGCAAUUAGUGCCCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG
..(((((((.......))))..--------((...(.(((((..((((.......))))..))))).).))((((.((((((.....)))))))))).........))). ( -28.30)
>DroEre_CAF1 25343 95 + 1
AGCUCGCCGUUUUUGUUGGCUG---------------UUGGGUGUUAAAGUGCAAUUAGUGCUCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG
..(((((((.......))))..---------------(((((..((((.......))))..))))).(((.((((.((((((.....)))))))))).))).....))). ( -23.10)
>DroYak_CAF1 23066 110 + 1
AGCUCGCCGUUUUUGUUGGCUGUUUGGGUGCUGGGUGUUGGGUGUUAAAGUGCAAUUAGUGCUCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG
..(((((((.......))))..........(((((..((((.(((......))).))))..))))).(((.((((.((((((.....)))))))))).))).....))). ( -28.80)
>consensus
AGCUCGCCGUUUCUGUUGGCUG_______________UUGGGUGUUAAAGUGCAAUUAGUGCCCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG
..(((((((.......)))).................(((((..((((.......))))..))))).(((.((((.((((((.....)))))))))).))).....))). (-25.11 = -24.68 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:04 2006