| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,672,819 – 14,672,931 |
| Length | 112 |
| Max. P | 0.822065 |
| Location | 14,672,819 – 14,672,931 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 92.38 |
| Mean single sequence MFE | -37.22 |
| Consensus MFE | -32.59 |
| Energy contribution | -33.12 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.822065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14672819 112 + 22224390 GCGUUUCUCGAAAAUCGCUGGGGUAACCUUGCGAACGUGCUCCUGCACACGGAAAAACGCCAGCGAUGGAUCGUUGGCGAAUAUGUGUAUGUUCUCCGAUAUCUUCUCUGAU ((((((.((.....((((.(((....))).))))..((((....))))...)).))))))(((.((.((((.(((((.((((((....)))))).))))))))))).))).. ( -40.80) >DroSec_CAF1 5535 112 + 1 GCGUUUCUCGAAAAUCGCUGGGGUAACCUUGCGAACGUGCUCCUGCACACGGAAAAACGCCAGCGAUGGAUCGUUGGCGAAUAUGUGUAUGUUCUCCGAUAUCUUCUGUGAU ((((((.((.....((((.(((....))).))))..((((....))))...)).))))))..(((..((((.(((((.((((((....)))))).)))))))))..)))... ( -38.60) >DroSim_CAF1 5467 112 + 1 GCGUUUCUCGAAAAUCGCUGGGGUAACCUUGCGAACGUGCUCCUGUACACGGAAAAACGCCAGCGAUGGAUCGUUGGCGAAUAUGUGUAUGUUCUCCGAUAUCUUCUGUGAU ((((((.((.....((((.(((....))).))))..((((....))))...)).))))))..(((..((((.(((((.((((((....)))))).)))))))))..)))... ( -36.60) >DroEre_CAF1 6765 112 + 1 GCGUUUCUCGAAAAUCGCUGGGGAAACCUUGCGAACGUGCUCUUGCACCCGGAAAAAGGCCAGCGAUGGAUCGUUGGCGAAUAUGUGUAUGUUCUCCGAUAUCUUCUCCGAU .......(((....((((.(((....))).))))..((((....)))).((((.....((((((((....))))))))((((((....))))))))))..........))). ( -40.80) >DroYak_CAF1 5451 112 + 1 GCGUUUCUCGAAAAUCGCUGGGGAAACCUUUCGAACGUGCUCUUGCACGCGGAAAAACGCCAGCGAUGGAUCGUUGGCGAAUAUGUGUAUGUUCUCUGAUAUCUUCUCCGAU ..............(((..(((....)))..))).(((((....)))))((((.....((((((((....))))))))((((((....))))))............)))).. ( -38.40) >DroAna_CAF1 5577 112 + 1 GCGCUUCUCGAAAAUCGCUGGUGACACCUUCCGUACAUGCUCCUGGACCCGGAAAAACGCCAACGACGGGUCAUUGGCGAAUAUGUGUAUGUUCUCCGAUAUCUUUUCCGAG ......((((....(((.(((((.....(((((..((......))....)))))...))))).))).((((.(((((.((((((....)))))).)))))))))....)))) ( -28.10) >consensus GCGUUUCUCGAAAAUCGCUGGGGAAACCUUGCGAACGUGCUCCUGCACACGGAAAAACGCCAGCGAUGGAUCGUUGGCGAAUAUGUGUAUGUUCUCCGAUAUCUUCUCCGAU .......(((....((((.(((....))).))))..((((....)))).((((.....((((((((....))))))))((((((....))))))))))..........))). (-32.59 = -33.12 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:42 2006