| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,645,895 – 14,646,000 |
| Length | 105 |
| Max. P | 0.580467 |
| Location | 14,645,895 – 14,646,000 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -21.92 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14645895 105 - 22224390 UGGAUUGCCUUAAAUUUGUUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUUGAGCCAAGAGGUUUGGCUAUCGGCCAAGCGAUUAGAACACACA-AAUACC ..((((((.((((.((((.....)))).))))...........(((((.(.((((..((((....))))..)))).).)))))))))))..........-...... ( -27.20) >DroSec_CAF1 115402 105 - 1 UGGAUUGCCUUA-AUUUGCUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUUGAGCCAAGAGGUUUGGCUAUCGUCCAAGCGAUUAGAACUCGCAAAAUACC ((((((((((((-((((((...)).))))))).............))))(.((((..((((....))))..)))).)))))).((((.......))))........ ( -26.81) >DroSim_CAF1 113424 105 - 1 UGGAUUGCCUUA-AUUUGCUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUGGAGCCAAGAGGUUUGGCUAUCGUCCAAGCGAUUAGAACUCGCAAAAUACC ((((((((((((-((((((...)).))))))).............))))(.((((.(((((....))))).)))).)))))).((((.......))))........ ( -25.61) >DroYak_CAF1 111750 104 - 1 UGGAUUGCCUUA-AUUUGCACAGCGAAAUUAAUUAACACUACAUUGGCAGCCAGUAAAGCCAAAAGGUUUGGCUAUCAGCCAAGCGAUUAGAACUCACA-AGUACC ..((((((.(((-((((((...)).)))))))...........(((((((((((....(((....)))))))))....)))))))))))..........-...... ( -22.50) >consensus UGGAUUGCCUUA_AUUUGCUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUUGAGCCAAGAGGUUUGGCUAUCGGCCAAGCGAUUAGAACUCACA_AAUACC ..((((((......(((((...)))))................(((((.(.((((((((((....)))))))))).).)))))))))))................. (-21.92 = -22.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:30 2006