| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,625,980 – 14,626,094 |
| Length | 114 |
| Max. P | 0.719297 |
| Location | 14,625,980 – 14,626,094 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -44.03 |
| Consensus MFE | -20.97 |
| Energy contribution | -21.17 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14625980 114 + 22224390 ------CUUCACCUUCGCCCUCUGUGGUCUUCGAGUAGCUCUCAUCCGAGCUGCUCAUCGAGGGCGAGUGUGGUCGUGAGCUCAGAUCAUCCGUCGAGGACAUGUCGCGGCUCUCCUCCA ------....((.(((((((((....(....)(((((((((......)))))))))...))))))))).))((..(.(((((..(((..(((.....)))...)))..))))).)..)). ( -47.80) >DroVir_CAF1 105117 114 + 1 ------CGUCACCCUCGCCCUCGGUGGUCUUCGAAUAGCUCUCAUCGGAGCUGCUCAUCGAGGGCGAAUGCGGCCUAGAGCUCAAAUCAUCCGUCGAUGACAUUUCGCGAUUCUCCUCAA ------.(((....((((((((((((((........((((((....)))))))).))))))))))))..(((((.....)).....(((((....))))).....))))))......... ( -39.00) >DroPse_CAF1 110473 108 + 1 ------------CCUCGCCCUCCGUUGUCUUCGAGUAGCUCUCAUCGGAGCUGCUCAUCGAUGGGGAGUGCGGCCGAGAGCUUAGGUCAUCCGUUGAGGACAUGUCACGGCUCUCGUCCA ------------....((.((((.(..((...((((((((((....))))))))))...))..))))).))((.((((((((...(.(((((.....)))..)).)..)))))))).)). ( -49.70) >DroGri_CAF1 103904 114 + 1 ------CAUCGCCCUCACCCUCGGUGGUCUUUGAAUAGCUCUCAUCCGAGCUGCUCAUCGAGGGCGAAUGCGGGCGCGAGCUGAGAUCGUCUGUCGAUGACAUCUCGCGGCUCUCAUCAA ------..(((((((((((......)))...(((.((((((......)))))).)))..))))))))(((.(((((((((.((..((((.....))))..)).))))).)))).)))... ( -48.50) >DroWil_CAF1 118164 120 + 1 CAUCGCCCUCACCUUCACCUUCAGUGGUCUUCGAGUAACUCUCAUCUGAACUGCUCAUCGAUGGUGAAUGUGGACGUGAGCUUAAAUCAUCUGUGGAUGACAUUUCACGAUUCUCUUCCA ..((((..(((((.(((((......)))....(((((..((......))..)))))...)).)))))..)))).((((((......(((((....)))))...))))))........... ( -31.50) >DroAna_CAF1 235992 114 + 1 ------AUUCGCCCUCACCCUCGGUGGUCUUGGAGUAGCUCUCGUCCGAACUGCUCAUCGACGGGGAAUGCGGGCGAGAGCUGAGAUCAUCCGUGGAGGACAUCUCGCGGUUCUCCUCCA ------........(((((...)))))...(((((.((((((((((((...(.(((......))).)...))))))))))))((((....(((((((.....)).))))).))))))))) ( -47.70) >consensus ______CUUCACCCUCACCCUCGGUGGUCUUCGAGUAGCUCUCAUCCGAGCUGCUCAUCGAGGGCGAAUGCGGCCGAGAGCUCAGAUCAUCCGUCGAGGACAUCUCGCGGCUCUCCUCCA ..............((((.....)))).....(((((((((......)))))))))...((.((.(((((((((...((.......))....((.....))..))))).)))).)))).. (-20.97 = -21.17 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:23 2006