Locus 5644

Sequence ID X_DroMel_CAF1
Location 14,578,543 – 14,578,641
Length 98
Max. P 0.837530
window9167

overview

Window 7

Location 14,578,543 – 14,578,641
Length 98
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.67
Mean single sequence MFE -16.72
Consensus MFE -11.58
Energy contribution -11.58
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.69
SVM decision value 0.74
SVM RNA-class probability 0.837530
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14578543 98 - 22224390
CACACCGCUCCUCUGCGCCACUCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--AAUCAGUCGGCUCCAAAUAUUCACAAAGAUUUACGAACAC
......((......))((((((.....(((((...(((..(....)..)))...))))--)...))).)))............................. ( -19.90)
>DroSec_CAF1 53958 83 - 1
CCCACU---------------CCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--AAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACAC
.....(---------------(...(((((.((((((..(.((....)))..))))))--.....((.((..........))))..)))))...)).... ( -13.80)
>DroSim_CAF1 54000 83 - 1
CCCACU---------------CCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--AAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACAC
.....(---------------(...(((((.((((((..(.((....)))..))))))--.....((.((..........))))..)))))...)).... ( -13.80)
>DroEre_CAF1 48596 98 - 1
CACUCCAUUCCUCUCCGCCACUCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG--CCUCGGUCGGCUCCAAAUAUUCACAAAGCGUUACGAACAC
...............(((.................(((..(....)..)))..(((((--((......)))))))............))).......... ( -20.20)
>DroYak_CAF1 50393 99 - 1
CACUCUCUCCCA-UUUACCUCCUCCAAUCUCCUCCAGCUGACCACUUGGCUACUGGAGAGAAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACGC
............-....((..((....((((.(((((..(.((....)))..)))))))))...))..)).............................. ( -15.90)
>consensus
CACACU___CC__U___CC_CCCACAAUCUCCUCCAGCUGACCACUUGGCUACUGGAG__AAUCAGUCGGCUCCAAAUAUCCACAAAGAUUUACGAACAC
...............................((((((..(.((....)))..))))))........(((........................))).... (-11.58 = -11.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:02 2006