Locus 5624

Sequence ID X_DroMel_CAF1
Location 14,510,121 – 14,510,221
Length 100
Max. P 0.905716
window9138

overview

Window 8

Location 14,510,121 – 14,510,221
Length 100
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 78.27
Mean single sequence MFE -32.37
Consensus MFE -21.27
Energy contribution -23.02
Covariance contribution 1.75
Combinations/Pair 1.13
Mean z-score -2.01
Structure conservation index 0.66
SVM decision value 1.04
SVM RNA-class probability 0.905716
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14510121 100 + 22224390
GU--UUGUUUGUUUGCCAACUGUCUGCCUGUCCGUCUGC--UCUGCUCGUUGCUCUCACUGGGCUCAGGGGCAAUAAAAUAAGCAGCCAAAUGAAAUGGCUGCA
..--((((((..(((((..(((...((((........((--..........)).......)))).))).)))))..))))))(((((((.......))))))). ( -31.06)
>DroPse_CAF1 37710 98 + 1
GU--UUGUUUGUUUGCCAACUGUCUGUCGU--UGUCUGGGGCGGGCAAACAGCCAGCGAUGGGACCA--GGCAAUAAAAUAAGCAGCGAAAUGAAAUGGCUGCA
..--((((((..(((((.....((((((((--((.(((..(....)...))).))))))))))....--)))))..))))))(((((.(.......).))))). ( -33.90)
>DroYak_CAF1 39468 96 + 1
GUUUUUGUUUGUUUGCCAACUGUCUGUCUGCCUGUUCGC--UCUG------ACUCUGACUGGGCUCAGGGGCAAUAAAAUAAGCAGCCAAAUGAAAUGGCUGCA
....((((((..(((((.((.....))...((((...((--((..------.........)))).)))))))))..))))))(((((((.......))))))). ( -30.60)
>DroPer_CAF1 37715 98 + 1
GU--UUGUUUGUUUGCCAACUGUCUGUCGU--UGUCUGGGGCGGGCAAACAGCCAGCGAUGGGACCA--GGCAAUAAAAUAAGCAGCGAAAUGAAAUGGCUGCA
..--((((((..(((((.....((((((((--((.(((..(....)...))).))))))))))....--)))))..))))))(((((.(.......).))))). ( -33.90)
>consensus
GU__UUGUUUGUUUGCCAACUGUCUGUCGG__UGUCUGC__CCGGCAAACAGCCAGCAAUGGGACCA__GGCAAUAAAAUAAGCAGCCAAAUGAAAUGGCUGCA
....((((((..(((((....(((((((((...(.(((...........))))..))))))))).....)))))..))))))(((((((.......))))))). (-21.27 = -23.02 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:36 2006