| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 247,297 – 247,415 |
| Length | 118 |
| Max. P | 0.732123 |
| Location | 247,297 – 247,415 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.94 |
| Mean single sequence MFE | -24.13 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.43 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 247297 118 - 22224390 AGUUAAUGCGGUAUA-UAAGCAAACAAAUUAA-AAAAAUUGAUUUGUCCAUAUAAAAAGGCAAAGUAGCACGAAAAAUGUUACGUUGCGAGAGAGUAGGAACCUUAUUUUUACAGCGCAU .....(((((.((((-(..(((((..((((..-...))))..)))))..))))).....((((.((((((.......)))))).))))(.(((((((((...))))))))).)..))))) ( -25.30) >DroSim_CAF1 16130 96 - 1 AGGUA---------------------AAUGAA-AAAAUUUGAUUUGUCCAUAUAAAAAGGCAAAGUAGCACGAAAAAUGUUACGUUGCGA--GAGUAGGCACCUUAUUUUUGCAGCGUAU .((((---------------------(((.((-.....)).))))).))..........((......))...........((((((((((--(((((((...))))))))))))))))). ( -24.70) >DroYak_CAF1 17167 118 - 1 AGUGUAUAGACUCCAUUAAGCAAACGUAAUAAAAUUAUUAGAUUUUUCCAUAUUAAAAAGCUAAGUAAGUCGAACAAUUUUAAAUUGCGA--AAGUAGGCGCCUUAUUUUUGCAGCGCAU .((((...((((..(((.(((.....((((((((((....))))).....)))))....))).))).))))..............(((((--(((((((...)))))))))))))))).. ( -22.40) >consensus AGUUAAU____U__A_UAAGCAAAC_AAUUAA_AAAAUUUGAUUUGUCCAUAUAAAAAGGCAAAGUAGCACGAAAAAUGUUACGUUGCGA__GAGUAGGCACCUUAUUUUUGCAGCGCAU ...........................................................((...((((((.......))))))(((((((..(((((((...)))))))))))))))).. (-11.20 = -11.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:29 2006