Locus 5597

Sequence ID	X_DroMel_CAF1
Location	14,452,927 – 14,453,017
Length	90
Max. P	0.908276

overview

Window 9

Location	14,452,927 – 14,453,017
Length	90
Sequences	4
Columns	93
Reading direction	forward
Mean pairwise identity	90.84
Mean single sequence MFE	-30.35
Consensus MFE	-23.00
Energy contribution	-23.56
Covariance contribution	0.56
Combinations/Pair	1.04
Mean z-score	-2.82
Structure conservation index	0.76
SVM decision value	1.06
SVM RNA-class probability	0.908276
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14452927 90 + 22224390
ACUGAAUGUCCUCCUC---CGACAUUUCCGUCGGGGGCAUCAGCUGUUGAGGAUUCCUUCUCGAUUCUUUCCUCCUGUGGCUCCUGUGCCACA
.((((.(((((....(---((((......))))))))))))))..((((((((....))))))))...........(((((......))))). ( -32.20)
>DroSec_CAF1 13970 89 + 1
ACUGAAUGUCCUCCUG---CGACACUUCCGUCGGGGGCAUCAGCUGGAGAGGAUUCCUUCUCGAUUCUUU-CUCCUGUGGCUCCUGUGCCACA
.((((.(((((.((.(---((.......))).)))))))))))..((((((((.((......)).)).))-)))).(((((......))))). ( -35.10)
>DroEre_CAF1 14933 89 + 1
ACUGAAUGUCCUCCUC---CGACAUUUCCGUCGGGGGCAUCAGCUGAAGAGGAUUCCUUCUCGAUUCCUU-CUCCUGCGGCUCCUGUGCCACA
..(((.(((((....(---((((......)))))))))))))((.((..((((.((......)).)))).-.))..))(((......)))... ( -30.80)
>DroYak_CAF1 12936 92 + 1
UCUGAAUGUCCUCCUCCUCUGACAUUUCCAUUGGGGGCAUCAGCUGGCGAGGAUUCCUUCUCGAUUCUUU-CUCAUGCGGCUCCUGUGCCACA
...(((.((((((..((.((((..(..((...))..)..))))..)).))))))...)))..........-....((.(((......))).)) ( -23.30)
>consensus
ACUGAAUGUCCUCCUC___CGACAUUUCCGUCGGGGGCAUCAGCUGGAGAGGAUUCCUUCUCGAUUCUUU_CUCCUGCGGCUCCUGUGCCACA
.((((.(((((((.......(((......)))))))))))))).....(((((....))))).............((((((......)))))) (-23.00 = -23.56 +   0.56)

alignment

secondary structure

dotplot

Window 0

Location	14,452,927 – 14,453,017
Length	90
Sequences	4
Columns	93
Reading direction	reverse
Mean pairwise identity	90.84
Mean single sequence MFE	-30.35
Consensus MFE	-21.99
Energy contribution	-22.30
Covariance contribution	0.31
Combinations/Pair	1.08
Mean z-score	-2.09
Structure conservation index	0.72
SVM decision value	0.29
SVM RNA-class probability	0.670796
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14452927 90 - 22224390
UGUGGCACAGGAGCCACAGGAGGAAAGAAUCGAGAAGGAAUCCUCAACAGCUGAUGCCCCCGACGGAAAUGUCG---GAGGAGGACAUUCAGU
((((((......)))))).(((((................)))))....(((((..((.((((((....)))))---).)).......))))) ( -29.79)
>DroSec_CAF1 13970 89 - 1
UGUGGCACAGGAGCCACAGGAG-AAAGAAUCGAGAAGGAAUCCUCUCCAGCUGAUGCCCCCGACGGAAGUGUCG---CAGGAGGACAUUCAGU
((((((......))))))((((-(..((.((......)).)).))))).((((((((((((((((....)))))---..)).)).)).))))) ( -32.10)
>DroEre_CAF1 14933 89 - 1
UGUGGCACAGGAGCCGCAGGAG-AAGGAAUCGAGAAGGAAUCCUCUUCAGCUGAUGCCCCCGACGGAAAUGUCG---GAGGAGGACAUUCAGU
((((((......))))))((((-(.(((.((......)).)))))))).(((((..((.((((((....)))))---).)).......))))) ( -34.30)
>DroYak_CAF1 12936 92 - 1
UGUGGCACAGGAGCCGCAUGAG-AAAGAAUCGAGAAGGAAUCCUCGCCAGCUGAUGCCCCCAAUGGAAAUGUCAGAGGAGGAGGACAUUCAGA
((((((......))))))....-..........(((....(((((.((..(((((.((......))....))))).))..)))))..)))... ( -25.20)
>consensus
UGUGGCACAGGAGCCACAGGAG_AAAGAAUCGAGAAGGAAUCCUCUCCAGCUGAUGCCCCCGACGGAAAUGUCG___GAGGAGGACAUUCAGU
((((((......)))))).............(((........)))....((((((((((((((((....))))).....)).)).)).))))) (-21.99 = -22.30 +   0.31)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:54 2006