| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,446,451 – 14,446,552 |
| Length | 101 |
| Max. P | 0.732260 |
| Location | 14,446,451 – 14,446,552 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 60.92 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -11.44 |
| Energy contribution | -11.17 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14446451 101 + 22224390 GUAGCUCCC---UUUAAAAUAAGUUUUCUAUACUUUCAGGAUGUGGC-AAUAAGCUCGGCACCACUGUGCCGCUUACGGUGGGUUUUGGGGGCAACAAUAUGACA ((.((((((---.........(((((.(((((((....)).))))).-...))))).(((.((((((((.....)))))))))))..)))))).))......... ( -28.00) >DroPse_CAF1 11896 81 + 1 ----------------AAAUAUAC---UUGGAGUCCACCGAUUUCAUGUGCGACCUUU-GACCACUGUGCCA--UACGGUGGACUGUCGG-GCAACACAAUCAC- ----------------........---.(((((((....)))))))(((.((((....-(.((((((((...--)))))))).).)))).-)))..........- ( -22.80) >DroSec_CAF1 7573 101 + 1 GUAGCUCCC---UUAAAAAUAUGUUUUCUGUAGUCCCAGGAUGUGAC-AAUAACCUACGUACCACCGUGCCGCUCACGGUGGGUUUUGGGGGCAACAAUAUGACA ((.((((((---.......(((((....(((.(((....)))...))-).......)))))((((((((.....)))))))).....)))))).))......... ( -32.60) >DroEre_CAF1 8730 103 + 1 GUAGAUGCCAAGCAAAAAGA-AGGUUUUGAAAUUCGCAGGACGCGAC-AAUGAGCUCGGUACCACUGUGCCGCUUACGGUGGGUUUUGGGGGCAACAAUAUGACA ...(.((((...(((((...-...))))).....(.((((((.(.((-..(((((..(((((....))))))))))..)).))))))).))))).)......... ( -28.60) >DroYak_CAF1 6384 92 + 1 GUAGCGCCC---UAAAAAAU-AGGUUUGGAAAUUCAUAGGCUGUGCC-AAUAAACUCAGCACCACUGUGCCGCUUACGGUGGGUUUUGGGGGCAACA-------- ((.((.(((---(((((...-..................((((.(..-......).)))).((((((((.....)))))))).)))))))))).)).-------- ( -29.80) >DroPer_CAF1 12200 81 + 1 ----------------AAAUAUAC---CUGGAGUCUAGCGAUUUUUUGUGUGACCUUU-GACCACUGUGCCA--UACGGUGGACUGUCGC-GCAACACAAUCAC- ----------------........---((((...)))).((((..(((((((((....-(.((((((((...--)))))))).).)))))-))))...))))..- ( -23.00) >consensus GUAGCUCCC___U_AAAAAUAAGCUUUCUAAAGUCCCAGGAUGUGAC_AAUAACCUCGGCACCACUGUGCCGCUUACGGUGGGUUUUGGGGGCAACAAUAUGAC_ .............................................................((((((((.....))))))))....................... (-11.44 = -11.17 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:50 2006