Locus 5576

Sequence ID X_DroMel_CAF1
Location 14,407,715 – 14,407,815
Length 100
Max. P 0.715802
window9048

overview

Window 8

Location 14,407,715 – 14,407,815
Length 100
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 90.61
Mean single sequence MFE -24.60
Consensus MFE -19.40
Energy contribution -20.28
Covariance contribution 0.88
Combinations/Pair 1.16
Mean z-score -1.61
Structure conservation index 0.79
SVM decision value 0.39
SVM RNA-class probability 0.715802
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14407715 100 + 22224390
GAUUGCGUACAUGUACUUAGUGUAAUUGGUUCACUUUGAGGCAACUCGAAUGCUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAA-----
(((((.((((((...(((((......(((..((.((((((....))))))))....))).)))))....)))))).)))))...((((((....))))))----- ( -22.70)
>DroSec_CAF1 117676 100 + 1
GAUUGCCUACAUGUACUUAGUGUAAUUGGUUCACUUUUAGGCAACUCGAAUGUGUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAA-----
..((((((((((.......))))...(((..((((((.((....)).))).)))..)))....))))))...............((((((....))))))----- ( -23.50)
>DroSim_CAF1 110632 99 + 1
GAUUGCCUACAUGUACUUAGUGUAAUUGGUUCACUUUCAGGCAACUCGAAUGUUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAA------
..((((((((((.......))))...(((...((.(((((....)).))).))...)))....))))))................(((((....)))))------ ( -19.60)
>DroEre_CAF1 102863 99 + 1
AAGUGCGUACAUGUACUUAGUGUAAUUGGUUGGCUUUGAGGCAACUCGAAUGCUUUCCAUCUGAGGCAGCUGUAUUUAAUUUUAUUUUGCCAGUGCAA------G
(((((((....)))))))..((((..(((..(((((((((....)))))).)))..))).....(((((..(((........))).)))))..)))).------. ( -30.30)
>DroYak_CAF1 118119 105 + 1
GAAUGCGUACAUGUACUUAGUGUAAUUGGUUCGCUUUGAGGCAACUCGAAUGUUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAAGGGCG
((((...(((((.......)))))....))))((((((((....))))))(.(((((((((.(.((.(((((..........))))).)))))))))))).))). ( -26.90)
>consensus
GAUUGCGUACAUGUACUUAGUGUAAUUGGUUCACUUUGAGGCAACUCGAAUGUUUUCCAUUUGAGGCAAAUGUAUUUAAUUUUAUUUUCCCAGUGGAAAA_____
(((((.((((((...(((((......(((...((((((((....)))))).))...))).)))))....)))))).)))))....(((((....)))))...... (-19.40 = -20.28 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006