Locus 557

Sequence ID X_DroMel_CAF1
Location 1,607,807 – 1,607,904
Length 97
Max. P 0.923860
window876

overview

Window 6

Location 1,607,807 – 1,607,904
Length 97
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 75.08
Mean single sequence MFE -26.20
Consensus MFE -12.33
Energy contribution -12.25
Covariance contribution -0.08
Combinations/Pair 1.25
Mean z-score -2.22
Structure conservation index 0.47
SVM decision value 1.16
SVM RNA-class probability 0.923860
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1607807 97 - 22224390
GAAG-GAGGGCGGAGUACUUUUG------GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUUGUUAAA---GCAUUUACGGCCGAUCGGUCAG----UAGACAUGUGGAAA
....-...(((.((...((((((------((((.........))))))))))......((((((....---......))))))..)).)))..----.............. ( -23.40)
>DroSec_CAF1 3552 97 - 1
GAAG-GAGGGCGGAGUACUUUUG------GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUAAAA---GCAUUUAUGGCCGAUCGGUCAG----UAGACAUGUGGAAA
....-...(((.((...((((((------((((.........))))))))))......(((((((((.---...)))))))))..)).)))..----.............. ( -27.10)
>DroSim_CAF1 19551 97 - 1
GAAG-GAGGGCGGAGUACUUUUG------GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUAAAA---GCAUUUAUGGCCGAUCGGUCAG----UAGACAUGUGGAAA
....-...(((.((...((((((------((((.........))))))))))......(((((((((.---...)))))))))..)).)))..----.............. ( -27.10)
>DroEre_CAF1 4595 88 - 1
--AUUUUGGUC-GAGUU-CA------------CGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUUAAA---GCAUUUACGGCCGAUCGGUGGG----UGGGCAUGUGGAAA
--.((((((((-(..((-((------------.....)))).))))))))).................---...(((((((((.(((....))----).))).)))))).. ( -24.00)
>DroYak_CAF1 4910 95 - 1
GCAA-GAGGUCGGAGUUCCA------------CGAGAUGAGGUGACCAUAAGAGAAUAGGUCGUAAAA---ACAUUUACGGCCGAUCGGUCGGUCAGUAGACAUGUGCAAA
(((.-...(((((....)).------------........(.(((((....((.....(((((((((.---...)))))))))..))....))))).).)))...)))... ( -29.30)
>DroAna_CAF1 5368 97 - 1
----------CAGAGUACUGGGAAGCCGCACCACAGAUGAGGUGACCAGAAGACCUGAGAUCGUAAAAUAUAUAUUUACGGGCAAUUGGUCGG----UACACAUGUGGAAA
----------.........((....))...(((((..((.(.(((((((..(.((((((((.(((.....))))))).)))))..))))))).----).))..)))))... ( -26.30)
>consensus
GAAG_GAGGGCGGAGUACUUUUG______GUCGGAGAUGAGGUGACCAGAAGAGAAUAGGUCGUAAAA___GCAUUUACGGCCGAUCGGUCAG____UAGACAUGUGGAAA
..........................................(((((....((.....(((((((((.......)))))))))..)))))))................... (-12.33 = -12.25 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:40 2006