Locus 5535

Sequence ID X_DroMel_CAF1
Location 14,322,752 – 14,322,843
Length 91
Max. P 0.951627
window8987 window8988

overview

Window 7

Location 14,322,752 – 14,322,843
Length 91
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 84.97
Mean single sequence MFE -33.92
Consensus MFE -22.69
Energy contribution -26.00
Covariance contribution 3.31
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.67
SVM decision value 1.41
SVM RNA-class probability 0.951627
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14322752 91 + 22224390
GUUUUCUGUCGCUGUUGCUGUUCGGUUGUGUUGGCAUUUGGGCGAAAGUGCAAACAGC---------AGCAACAGCGCUCUCGAAAUGUGCAAAUAUCAG
(((((..(.(((((((((((((.((((.....))).((((.((....)).))))))))---------))))))))))..)..)))))............. ( -30.70)
>DroSec_CAF1 35206 100 + 1
UUUUUCUGUCGCUGUUGCUGUUCGGUUGUGUUGGCAUUUGGGCGAAAGUGCAAACAGCAGCAGCAGCAGCAACAGCGCUCUCGAAAUGUGCAAAUAUCAG
......(((.(((((((((((...(((((....((((((......))))))..))))).))))))))))).)))((((.........))))......... ( -39.30)
>DroSim_CAF1 32580 100 + 1
UUUUUCUGUCGCUGUUGCUGUUCGGUUGUGUUGGCAUUUGGGCGAAAGUGCAAACAGCAGCAGCAGCAGCAACAGCGCUCUCGAAAUGUGCAAAUAUCAG
......(((.(((((((((((...(((((....((((((......))))))..))))).))))))))))).)))((((.........))))......... ( -39.30)
>DroEre_CAF1 33516 79 + 1
UUUUGC------CGUUGCUGUUCGCUUGUGUUGGCAUUUGGGCGAAAGUGCAAACAGCA---------------GCGCUCUCGAAAUGUGCAAAUAGCAG
...(((------..((((..((((...((((((...((((.((....)).))))...))---------------))))...))))....))))...))). ( -26.40)
>consensus
UUUUUCUGUCGCUGUUGCUGUUCGGUUGUGUUGGCAUUUGGGCGAAAGUGCAAACAGCA________AGCAACAGCGCUCUCGAAAUGUGCAAAUAUCAG
.....((((.((((((((((((.....(((....))).((.((....)).)))))))))))))).)))).....((((.........))))......... (-22.69 = -26.00 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 14,322,752 – 14,322,843
Length 91
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 84.97
Mean single sequence MFE -25.06
Consensus MFE -15.49
Energy contribution -16.87
Covariance contribution 1.38
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.62
SVM decision value 0.05
SVM RNA-class probability 0.558708
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14322752 91 - 22224390
CUGAUAUUUGCACAUUUCGAGAGCGCUGUUGCU---------GCUGUUUGCACUUUCGCCCAAAUGCCAACACAACCGAACAGCAACAGCGACAGAAAAC
..............((((.....((((((((((---------(.((((.(((.((......)).))).))))........)))))))))))...)))).. ( -23.90)
>DroSec_CAF1 35206 100 - 1
CUGAUAUUUGCACAUUUCGAGAGCGCUGUUGCUGCUGCUGCUGCUGUUUGCACUUUCGCCCAAAUGCCAACACAACCGAACAGCAACAGCGACAGAAAAA
..............((((.....(((((((((((...(.(.((.((((.(((.((......)).))).)))))).).)..)))))))))))...)))).. ( -27.80)
>DroSim_CAF1 32580 100 - 1
CUGAUAUUUGCACAUUUCGAGAGCGCUGUUGCUGCUGCUGCUGCUGUUUGCACUUUCGCCCAAAUGCCAACACAACCGAACAGCAACAGCGACAGAAAAA
..............((((.....(((((((((((...(.(.((.((((.(((.((......)).))).)))))).).)..)))))))))))...)))).. ( -27.80)
>DroEre_CAF1 33516 79 - 1
CUGCUAUUUGCACAUUUCGAGAGCGC---------------UGCUGUUUGCACUUUCGCCCAAAUGCCAACACAAGCGAACAGCAACG------GCAAAA
......(((((......(....)((.---------------((((((((((......((......))........)))))))))).))------))))). ( -20.74)
>consensus
CUGAUAUUUGCACAUUUCGAGAGCGCUGUUGCU________UGCUGUUUGCACUUUCGCCCAAAUGCCAACACAACCGAACAGCAACAGCGACAGAAAAA
.........((.(.......).)).(((((((((.......(((((((((.......((......)).........))))))))).)))))))))..... (-15.49 = -16.87 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:24 2006