| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,302,196 – 14,302,295 |
| Length | 99 |
| Max. P | 0.770761 |
| Location | 14,302,196 – 14,302,295 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 61.59 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -6.12 |
| Energy contribution | -7.52 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.22 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14302196 99 + 22224390 AAAAGAUUCCGCUCACCGAUA---------CCCGCAUUUUGCAGCUACCGUUCAUAUACG------UUCUGCGUAUAC-GUAAUGCGUAUUACGUAUACGCCGUGUAAACAG-GAC .......((((((....(...---------..)((.....)))))....(((..((((((------....((((((((-(((((....)))))))))))))))))))))).)-)). ( -27.40) >DroPse_CAF1 20906 94 + 1 GAA----------CACGGAGAGCAGUCGCAUCCGCAU----CCGCAUCCG--CAUUCGCA------UUCCGUGUAUCCCAUAUCCCAUAUUACGUAUACGCUGUGUAAACAGCGAC ..(----------(((((((.((....((....))..----..((....)--)....)).------))))))))........................((((((....)))))).. ( -27.60) >DroSec_CAF1 15051 99 + 1 AAAACAUUCCGAUCACCGAUA---------CCCGCAUUUUGCAGCUACCGCUCAUAUGCG------UUCUGCGUAUAC-GUAAUGCGUAUUGCGUAUACGCCGUGUAAACAG-GAC .......(((...(((.....---------..(((((..((.(((....))))).)))))------....((((((((-(((((....))))))))))))).)))......)-)). ( -31.00) >DroEre_CAF1 13669 92 + 1 -------------CAGCGAUG---------CCCGCGGUUUUCAGCUGCCGUUCAAAUACGCGCGCAUUGUGCGUAUAC-GUAAUGCGUAUUACGCAUACGUCCUGUGAACAG-GAC -------------..((((((---------(.((((..(((.(((....))).)))..)))).)))))))((((((((-(.....)))).)))))....((((((....)))-))) ( -39.20) >DroYak_CAF1 17795 89 + 1 AAA----------CACCGAUA---------CCCGCACUUUUCAGCUACCGUUCAAAUAGG------UUCUGCGUAUAC-GUAAUGCGUAUUACGUAUACGCCGUGUAAACAG-GAC ...----------..((....---------...((((.....((..(((.........))------).))((((((((-(((((....))))))))))))).)))).....)-).. ( -24.30) >DroAna_CAF1 79143 86 + 1 AAG----------CUACAAUU---------CCCGAUUCAAGCAAGAAGUGAUGACAA---------CGGUGCGUAUAC-GUAAUAUGCAUAGAGUCUAGUAGGCUGAAAAAG-GGG ...----------........---------(((..((((.((..........(((..---------..((((((((..-...))))))))...)))......))))))...)-)). ( -19.29) >consensus AAA__________CACCGAUA_________CCCGCAUUUUGCAGCUACCGUUCAUAUACG______UUCUGCGUAUAC_GUAAUGCGUAUUACGUAUACGCCGUGUAAACAG_GAC ......................................................................((((((((.(((((....)))))))))))))............... ( -6.12 = -7.52 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:06 2006