Locus 5517

Sequence ID X_DroMel_CAF1
Location 14,284,746 – 14,284,852
Length 106
Max. P 0.685094
window8952

overview

Window 2

Location 14,284,746 – 14,284,852
Length 106
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 87.33
Mean single sequence MFE -26.88
Consensus MFE -18.94
Energy contribution -19.44
Covariance contribution 0.50
Combinations/Pair 1.15
Mean z-score -1.79
Structure conservation index 0.70
SVM decision value 0.32
SVM RNA-class probability 0.685094
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14284746 106 + 22224390
AA-AAGUGAAUAAAUAAGGACAUGCAA--------GGCGAAUAUGUGUAUAGUAGUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGUGAAAGUUUUCAGACUAAGGU
..-................((((((..--------(((((((((.(((............))).)))))))))...((((.....))))))))))...((((....))))..... ( -24.10)
>DroSec_CAF1 25151 106 + 1
AA-AAGGGAAUAAAUAAGGACAUGCAA--------GGGGGAUACGUGCAUAGUACUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGUGAAAGUUUCCAGACUAAGGU
..-..((((((........((((((..--------(((((((((.(((............))).)))))).)))..((((.....))))))))))....)))))).......... ( -26.80)
>DroSim_CAF1 28449 106 + 1
AA-AAGGGAAUAAAUAAGGACAUGCAA--------GGGGGAUACGUGCAUAGUACUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGCGAAAGUUUCCAGACUAAGGU
..-..(((((..........(((((..--------(((((((((.(((............))).)))))).)))..((((.....)))))))))(....)))))).......... ( -26.30)
>DroEre_CAF1 26954 113 + 1
AAAAAGGGAAUAAAUAAGGCCAUGCAGGCCGUGCAGGGGGAAA--UGUAAAAUACUGAAGGCAAGUGCUCGUUCGCCUGAAUAUUUCAGGCAUGUGAAAGUUUCCAGACCAAGGU
.................((((.....)))).....((.(((((--(.....(((..((((((....)))..)))((((((.....)))))).)))....))))))...))..... ( -30.30)
>consensus
AA_AAGGGAAUAAAUAAGGACAUGCAA________GGGGGAUACGUGCAUAGUACUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGUGAAAGUUUCCAGACUAAGGU
.....((((((.........(((((..........(((((((((.(((............))).)))))).)))..((((.....))))))))).....)))))).......... (-18.94 = -19.44 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:52 2006