Locus 5495

Sequence ID X_DroMel_CAF1
Location 14,262,442 – 14,262,535
Length 93
Max. P 0.935283
window8912

overview

Window 2

Location 14,262,442 – 14,262,535
Length 93
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 89.95
Mean single sequence MFE -35.57
Consensus MFE -29.65
Energy contribution -30.90
Covariance contribution 1.25
Combinations/Pair 1.09
Mean z-score -2.17
Structure conservation index 0.83
SVM decision value 1.24
SVM RNA-class probability 0.935283
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14262442 93 + 22224390
---GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCGCAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA
---(((((((((((((..(((((((.(((.......)))..)))))...))..)))).)))))))))..(((((((.((....)).)))).))).. ( -37.40)
>DroSec_CAF1 3169 93 + 1
---GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCACAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA
---(((((((((((((..(((((((.(((.......)))..)))))...))..)))).)))))))))..(((((((.((....)).)))).))).. ( -37.80)
>DroSim_CAF1 7152 93 + 1
---GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCACAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA
---(((((((((((((..(((((((.(((.......)))..)))))...))..)))).)))))))))..(((((((.((....)).)))).))).. ( -37.80)
>DroEre_CAF1 6397 90 + 1
GGU------UGGUCCCCACUGAAGAAGCAUGUCAUUUGCGGUCCUCGAGAGGCGGCGACCACAAGUCAGGGCUUCCUUGACACCGCAGAAUGGCAA
.((------(..((......))...))).((((((((((((((.(((.....))).))))....(((((((...)))))))...)))).)))))). ( -29.30)
>consensus
___GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCACAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA
.....(((((((.(.....(((((((((.((..((((((((((.(((.....))).))))))))))))..))))))))).).)))))))....... (-29.65 = -30.90 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:16 2006