Locus 5492

Sequence ID X_DroMel_CAF1
Location 14,260,566 – 14,260,657
Length 91
Max. P 0.997279
window8908

overview

Window 8

Location 14,260,566 – 14,260,657
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 74.61
Mean single sequence MFE -19.88
Consensus MFE -12.12
Energy contribution -14.38
Covariance contribution 2.25
Combinations/Pair 1.15
Mean z-score -2.53
Structure conservation index 0.61
SVM decision value 2.83
SVM RNA-class probability 0.997279
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14260566 91 + 22224390
CACUACAAAUCACACUGAGAUGCAUUAUGAUUAGUUGGUGCGAGCGCUUUCAUUUAUUUUAUUCAAAUUUCAGUCAGCCCAAAUACAACUA
.............((((((((((((((........))))))(((....)))...............))))))))................. ( -12.80)
>DroSec_CAF1 1396 81 + 1
CACUAGAAAGCUGACUGAGAGGCAUUAUGAUUAGUUGCUGCGAGCGGCUUAAAUUAUUUUAUUCAAAUUUCAGUCAGCCAA----------
.........(((((((((((.(.((.((((((((((((.....))))))..))))))...)).)...)))))))))))...---------- ( -25.40)
>DroSim_CAF1 4989 81 + 1
CACCAUAAAGCUGACUGAGAGGCAUUAUGAUUAGUUGCUGCGAGCGGAUUAAAUUAUUUUAUUCAAAUUUCAGUCAGCCAA----------
.........(((((((((((......((((.(((((.(((....)))....)))))..)))).....)))))))))))...---------- ( -22.40)
>DroEre_CAF1 4789 71 + 1
CACUAAAAAGC-GACUGAAAGGCAUGAUGAUUAGUUACUUAAUGU-------AUUAUUGUGUUAAAAUUUCAGUCAGCG------------
.........((-((((((((((((..(((((..(((....)))..-------)))))..))))....)))))))).)).------------ ( -18.90)
>consensus
CACUAAAAAGCUGACUGAGAGGCAUUAUGAUUAGUUGCUGCGAGCGG_UUAAAUUAUUUUAUUCAAAUUUCAGUCAGCCAA__________
.........(((((((((((...........(((((((((....))))...)))))...........)))))))))))............. (-12.12 = -14.38 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:13 2006