Locus 5491

Sequence ID X_DroMel_CAF1
Location 14,259,700 – 14,259,795
Length 95
Max. P 0.952162
window8907

overview

Window 7

Location 14,259,700 – 14,259,795
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.03
Mean single sequence MFE -25.34
Consensus MFE -19.58
Energy contribution -19.34
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -2.42
Structure conservation index 0.77
SVM decision value 1.42
SVM RNA-class probability 0.952162
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14259700 95 + 22224390
UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAUUUGCUGC-GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA
............(((((((((((.......)))))))))))(((((-((.((....)).).))))))((((((....))))))............. ( -25.90)
>DroPse_CAF1 3683 95 + 1
UUUUCAUUAUGAAAAUGCAGCUGGA-GAUGCAGUUGCUGUUGCAGUUGCAGUUGUUGUUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUCUGA
(((((.....))))).(((((((..-....)))))))((((((((((((((.........))))))))))..)))).................... ( -25.20)
>DroSec_CAF1 573 95 + 1
UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAGUUGCUGC-GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA
(((((.....))))).(((((((.((...((((..(((((......-)))))..))))..)).)))))))...........((((......)))). ( -25.00)
>DroSim_CAF1 4103 95 + 1
UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAUUUGCUGC-GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA
............(((((((((((.......)))))))))))(((((-((.((....)).).))))))((((((....))))))............. ( -25.90)
>DroPer_CAF1 1245 89 + 1
UUUUCAUUAUGAAAAUGCAGCUGGA-GAUGCAGUUGCUGUUGG------AGUUGUUGUUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUCUGA
(((((.....))))).(((((((..-....)))))))..(..(------(((((((((....)))))((((((....)))))).....)))))..) ( -24.70)
>consensus
UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAGUUGCUGC_GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA
(((((.....))))).(((((((.......))))))).............((((((((....)))))((((((....)))))).....)))..... (-19.58 = -19.34 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:12 2006