Locus 5480

Sequence ID X_DroMel_CAF1
Location 14,245,420 – 14,245,525
Length 105
Max. P 0.798490
window8891

overview

Window 1

Location 14,245,420 – 14,245,525
Length 105
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 86.61
Mean single sequence MFE -24.39
Consensus MFE -16.96
Energy contribution -18.77
Covariance contribution 1.81
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.70
SVM decision value 0.61
SVM RNA-class probability 0.798490
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14245420 105 - 22224390
AAAA-------CCCUAUC-CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGACUGCCCACCCGCUGUCCACCCACUCGUGCAAC---
....-------.......-...((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...--- ( -27.02)
>DroSec_CAF1 153686 108 - 1
AAAA-------CCCUAUC-CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGACUGCCCACCCGCUGUCCACCCACUCGUGCACCACC
....-------.......-...((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...... ( -27.02)
>DroEre_CAF1 141001 108 - 1
AAAA-------CCCUAUU-CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGCCUGCCCACCCGCUGUCCACCCACUCGUGCACCACC
....-------.......-...((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...... ( -27.02)
>DroPer_CAF1 132484 115 - 1
AAAACCCUCAGCCCUAUCCCCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUCCAGCGAAAUUUAUGCUUAGACAGAAGACCCCCCCACCGCCCCCCACUGC-CCACC
..........................(((((.(((((((((....(((((....)))))....)))...))))))..)))))............................-..... ( -16.50)
>consensus
AAAA_______CCCUAUC_CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGACUGCCCACCCGCUGUCCACCCACUCGUGCACCACC
......................((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...... (-16.96 = -18.77 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:57 2006