Locus 547

Sequence ID	X_DroMel_CAF1
Location	1,558,983 – 1,559,073
Length	90
Max. P	0.956186

overview

Window 0

Location	1,558,983 – 1,559,073
Length	90
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	98.25
Mean single sequence MFE	-22.96
Consensus MFE	-22.64
Energy contribution	-22.64
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.52
Structure conservation index	0.99
SVM decision value	1.46
SVM RNA-class probability	0.956186
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1558983 90 - 22224390
CCAUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA
....(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))).............. ( -22.80)
>DroSec_CAF1 21338 90 - 1
CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA
..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))))............. ( -23.00)
>DroSim_CAF1 23267 90 - 1
CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA
..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))))............. ( -23.00)
>DroEre_CAF1 23054 90 - 1
CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA
..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))))............. ( -23.00)
>DroYak_CAF1 21809 93 - 1
CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCAGCAGCCCUUUGAUUAAUUAA
..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))......))))............. ( -23.00)
>consensus
CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA___GCCCUUUGAUUAAUUAA
....(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))......))).............. (-22.64 = -22.64 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:25 2006