Locus 5455

Sequence ID	X_DroMel_CAF1
Location	14,193,496 – 14,193,589
Length	93
Max. P	0.825007

overview

Window 4

Location	14,193,496 – 14,193,589
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	90.94
Mean single sequence MFE	-32.32
Consensus MFE	-28.02
Energy contribution	-27.70
Covariance contribution	-0.32
Combinations/Pair	1.08
Mean z-score	-1.46
Structure conservation index	0.87
SVM decision value	0.69
SVM RNA-class probability	0.825007
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14193496 93 - 22224390
AAGUUGUCGCUUCAGUUGUAGGGGCAAGCGGAGGCGGAGCCACGCCCCCUUCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU
..(.(((((.....((((.(((((...(((..(((...))).))))))))..))))))))).)((..((((((.......))))))..))... ( -29.20)
>DroSec_CAF1 103755 93 - 1
AAGUUGUCGCUUCCGUUGUCGGGGCAAGCGGAGGCGGAGCCACGCCCCCUGCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU
..(.(((((...(((....)))((((.(.((.((((......)))))))))))...))))).)((..((((((.......))))))..))... ( -32.30)
>DroSim_CAF1 81334 93 - 1
AAGUUGUCGCUUCAGUUGUCGGGGCAAGCGGAGGCGGAGCCACGCCCCCUGCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU
..............(.((((((((((.(.((.((((......)))))))))))..)))))).)((..((((((.......))))))..))... ( -32.00)
>DroEre_CAF1 92888 90 - 1
AAGUUGUCGCCCCAC---UGGGGGCAGGGGGAGGCGGAGCCACGCCCCCAUCCCAACGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU
..(.(((((((((..---..))))).(((((.((((......)))).))..)))...)))).)((..((((((.......))))))..))... ( -36.90)
>DroYak_CAF1 94704 90 - 1
AAGUUGUCGCUUCAC---UAGGGGCAAGGGGAGGCGGUGGCACGCCCCCUUCCGGCCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU
..(.(((((((((..---..))))).(((((.((((......)))))))))......)))).)((..((((((.......))))))..))... ( -31.20)
>consensus
AAGUUGUCGCUUCAGUUGUAGGGGCAAGCGGAGGCGGAGCCACGCCCCCUUCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU
..(.(((((((((.......)))))....((.((((......)))).))........)))).)((..((((((.......))))))..))... (-28.02 = -27.70 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:17 2006