Locus 5442

Sequence ID X_DroMel_CAF1
Location 14,174,350 – 14,174,453
Length 103
Max. P 0.948215
window8824

overview

Window 4

Location 14,174,350 – 14,174,453
Length 103
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.93
Mean single sequence MFE -42.22
Consensus MFE -31.42
Energy contribution -31.66
Covariance contribution 0.24
Combinations/Pair 1.07
Mean z-score -2.53
Structure conservation index 0.74
SVM decision value 1.38
SVM RNA-class probability 0.948215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14174350 103 - 22224390
GCUUUCGUUUGGUCGCCGAAUGUCGCUCUUUUUUUUGG------GGGG--GAAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU
(((......(.(((((((((((((((.(........)(------((.(--((((..((.((.....))..))..)))))...)))))))))))))))))).)..))).... ( -39.30)
>DroSec_CAF1 84865 108 - 1
GCUUUCGUUUGGUCGCCGAAUGUCGCUCUUGUUUUGGGGGGUGGGGGG---AAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU
(((......(.((((((((((((((((((......)))(((((((.((---((.........)))).)))((.....))..))))))))))))))))))).)..))).... ( -44.50)
>DroSim_CAF1 62770 109 - 1
GCUUUCGUCUGGUCGCCGAAUGUCGCUCUUUUUUUGGGGGUUGGGGGG--CUAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU
(((...(((..(((((((((((((((.((......))((((((..(((--(........))((((.....))))))..)).)))))))))))))))))))))).))).... ( -42.70)
>DroEre_CAF1 74759 111 - 1
GCUUUUGGUUGGUCGCCGAAUGUCGCUCUUUUUCAGGGGGGGGGGGGAGUGAAACAUCUACAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUUGGCGGCGAUUGGCAGUU
(((.(..((((.(((((((((((((((((......)))((((((.((((((.........)))))).)))((.....))...)))))))))))))))))))))..).))). ( -47.20)
>DroYak_CAF1 75147 100 - 1
GCUUUCGCUUGGUCGCCGAAUGUCGCUCUUUUUG--------GGGGG---AAAACGUCUACAUUCCGCUCGAAUUUUUCAUACUCGCGGCGUUUGGCGGCGAUUGGCAGUU
......((((.(((((((((((((((.......(--------((.((---((..........)))).)))((.....))......))))))))))))))).)..))).... ( -37.40)
>consensus
GCUUUCGUUUGGUCGCCGAAUGUCGCUCUUUUUUUGGGGG__GGGGGG__GAAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU
(((......(.(((((((((((((((................((((((...............))).)))((.....))......))))))))))))))).)..))).... (-31.42 = -31.66 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:59 2006