Locus 541

Sequence ID X_DroMel_CAF1
Location 1,547,933 – 1,548,035
Length 102
Max. P 0.901915
window853

overview

Window 3

Location 1,547,933 – 1,548,035
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.31
Mean single sequence MFE -26.20
Consensus MFE -13.02
Energy contribution -14.94
Covariance contribution 1.92
Combinations/Pair 1.28
Mean z-score -1.87
Structure conservation index 0.50
SVM decision value 1.02
SVM RNA-class probability 0.901915
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1547933 102 + 22224390
GCUGAGAGAACACGAAUCACUUUCGAAUUUGUUU-UGCAUA---UGUAAAC--------------GUUUUUGGAGUUGGAAGUUGCUUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA
((..(((.(((......((.(((((((..(((((-.((...---.))))))--------------)..))))))).))((...((((((....))))))..))..))).)))..)).... ( -24.20)
>DroSec_CAF1 10315 102 + 1
GCUGAGAUAACACGCCUCACUUUCGAAUUUGUAU-UACAUA---UGUAAAC--------------GUUUUUGAAGUUGGAAGGCGCCUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA
((..(((((((..((((((.(((((((..(((.(-(((...---.))))))--------------)..))))))).))..))))(((((....))))).......)))))))..)).... ( -35.30)
>DroSim_CAF1 12101 86 + 1
GCUGAGAUAACACGCCUCACUUUCGAAUUUGU----------------------------------UUUUUGAAGUUGGAAGGCGCCUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA
((..(((((((..((((((.(((((((.....----------------------------------..))))))).))..))))(((((....))))).......)))))))..)).... ( -29.80)
>DroEre_CAF1 11865 80 + 1
CCUAAGACAGCACGCCUUACUUUCGAAU---------------------------------------UUUUGGAGUUGGAAGGCGCUCUAAACA-GGCAUGUUAAGAUGUUUUGGCUGCA
.((((((((...((((((..((((((..---------------------------------------..))))))....)))))).(((.((((-....)))).)))))))))))..... ( -21.10)
>DroYak_CAF1 10520 115 + 1
CAUAACACU----GAGAUACUUUCAAAUUUGUAUGCACCUACGUUAUAAACGAUAGAACAUUAUGGUUUUUAGAGUUG-AAGGCGCUCCACACACGGCAUGUCAGGUUAUUUUGGCUGCA
.........----(((...(((((((.((((...((..((((((.....))).)))..(.....)))...)))).)))-))))..)))........(((.((((((....))))))))). ( -20.60)
>consensus
GCUGAGACAACACGCCUCACUUUCGAAUUUGU_U___C_UA___U_UAAAC______________GUUUUUGGAGUUGGAAGGCGCUUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA
(((((((((((..((((((.(((((((.........................................))))))).))..))))(((((....))))).......))))))))))).... (-13.02 = -14.94 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:18 2006