| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,015,822 – 14,015,930 |
| Length | 108 |
| Max. P | 0.553123 |
| Location | 14,015,822 – 14,015,930 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.73 |
| Mean single sequence MFE | -40.47 |
| Consensus MFE | -19.39 |
| Energy contribution | -20.07 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14015822 108 - 22224390 UGUA------GUAUUGUUCCUGGGUCACUGGAGCGGGAGCUGAAUAAGUCAGCUGCUGCACGGCCUGCACAGGAGCG------GCAGCGGUGUAGGUCUGUUCCUGUACAACUGGUGCUG ..((------((((((((((((.((..(((..((((.((((((.....)))))).)))).)))...)).))))))))------.(((..(((((((......)))))))..))))))))) ( -45.30) >DroPse_CAF1 147472 105 - 1 GAUAUGAAGAGGUCUGUUCUUGAACCACAGGUGCGGGAGCAGAGUAGGUU---UGUUGAACC------ACGGGGGCU------GGUGCGCUGUACGUCUGUUCCUGAACCACUGGGGCAG .....(((.(....).))).((..(((..(((.(((((((((((((((((---(...)))))------...((.((.------...)).)).))).)))))))))).)))..)))..)). ( -36.70) >DroGri_CAF1 29957 93 - 1 AAUA------UAUCUGU---UGAGCCACUGGAGCUGGAGCAGAAUAGGUU---UGCUGUACAACCGGCUCAGGU------------GCAGAGUAGGUUUG---UUGAACAACUGGAGCUG ....------..(((((---...(((....(((((((((((((.....))---))))......))))))).)))------------)))))...((((((---((....)))..))))). ( -25.50) >DroSec_CAF1 43142 105 - 1 UGUA------GUAUUGUUCCUGAGCCACUGGAGCGGGAACUGAAUAAGUC---UGCUGCACGGCCUGCACGGGAGCG------GGAGCGGUGUAGGUCUGUUCCUGUACAACUGGUGCGG ((((------(((..(((((((..((...))..))))))).((.....))---)))))))....((((((.((.(((------(((((((.......))))))))))....)).)))))) ( -42.00) >DroEre_CAF1 40046 105 - 1 UGUA------GACUUGUUCCUGGGCCACUAGAGCGGGAGCUGAAUAUGUC---UGCUGCACUGCCUGGACAGGAGCG------GAAGCGGUGUAAGUCUGUUCCUGUACAACUGGUGCGG .(((------(((.(((((((((....))))(((....)))))))).)))---)))(((((((..((.(((((((((------((.((...))...))))))))))).))..))))))). ( -44.70) >DroYak_CAF1 43291 111 - 1 UGUA------GAAUUGUUCCUGGGCCACUGGAGCGGGAGCUGAAUACGUC---UGCUGCACCGCCUGGACAGGAGCGGGAGCGGGAGCGGUGUAAGUCUGCUCCUGUACAACUGGUGCGG .(((------((..((((((..(....)..)(((....))))))))..))---)))(((((((..((.(((((((((((.((....))........))))))))))).))..))))))). ( -48.60) >consensus UGUA______GAAUUGUUCCUGAGCCACUGGAGCGGGAGCUGAAUAAGUC___UGCUGCACCGCCUGCACAGGAGCG______GGAGCGGUGUAGGUCUGUUCCUGUACAACUGGUGCGG ...............(((((((..(.....)..)))))))...............((((((.......((((((((.......................)))))))).......)))))) (-19.39 = -20.07 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:49 2006