| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,011,234 – 14,011,325 |
| Length | 91 |
| Max. P | 0.666540 |
| Location | 14,011,234 – 14,011,325 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 64.88 |
| Mean single sequence MFE | -37.22 |
| Consensus MFE | -15.16 |
| Energy contribution | -16.68 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14011234 91 + 22224390 ----------------GGUGCAUUCCCGGCGGGUCCUACCAAUGGAGGC-GCAUUCGCAGGGGGUCCUACGAAUGCGGCCUUCCAACUGCCACCAGGUGGUC---CUUUCG ----------------((((....(((...)))...))))..(((((((-(((((((.(((....))).))))))).))).))))((..((....))..)).---...... ( -36.30) >DroPse_CAF1 142437 82 + 1 --------------------AAU-CC--GUGGA---UCCUAAUGGAAAU-CCGUUUGGAAGCGGUCCACCGAAUGCGGCCAUACAGCAGCCACCACAAGGGGCACCCUU-- --------------------..(-(.--(((((---(((((((((....-)))))....)).))))))).)).(((.........)))(((.((....)))))......-- ( -25.20) >DroSec_CAF1 37923 91 + 1 ----------------GGUGCAUUCCCGGGGGGUCCUCCCAAUGGAGGU-GCAUUCCCGGGGGGCCCUACGAAUGCGGCCUUCCAACUGCCACCGGGUGGUC---CUUUCG ----------------((.((...(((((((((.(((((....))))).-....))))(((((((((.......).))))))))........)))))..)))---)..... ( -41.50) >DroSim_CAF1 39904 107 + 1 GGGUCCUCCCAAUGGAGGUGCAUUCCCGGGGGGUCCUCCUAAUGGAGGU-GCAUUCCCGGGGGGCCCUACGAAUGCGGCCUUCCAACUGCCACCUGGUGGUC---CUUUCG (((((((((....((..((((((..(((..(((....)))..)))..))-))))..)))))))))))..((((.(.((((..(((.........))).))))---).)))) ( -49.80) >DroPer_CAF1 163099 84 + 1 --------------------AAUUCC--GUGGA---UCCUAAUGGAAAUUCCGUUUGGAAGCGGUCCACCGAAUGCGGCCAUACCGCAUUCACCACAAGGGGCACCCUU-- --------------------......--((((.---(((.(((((.....))))).)))...((....))((((((((.....)))))))).))))(((((...)))))-- ( -33.30) >consensus ________________GGUGCAUUCCCGGGGGGUCCUCCUAAUGGAGGU_GCAUUCGCAGGGGGUCCUACGAAUGCGGCCUUCCAACUGCCACCAGGUGGUC___CUUUCG ........................(((.(((((((((((....)))))....)))))).)))(((((.......).))))........((((.....)))).......... (-15.16 = -16.68 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:48 2006