Locus 5370

Sequence ID X_DroMel_CAF1
Location 13,968,851 – 13,968,957
Length 106
Max. P 0.706269
window8715

overview

Window 5

Location 13,968,851 – 13,968,957
Length 106
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.48
Mean single sequence MFE -34.12
Consensus MFE -25.07
Energy contribution -24.79
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.41
Structure conservation index 0.73
SVM decision value 0.36
SVM RNA-class probability 0.706269
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13968851 106 - 22224390
GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGUUG-UGGCAGAGGGUCACUGGAAUAGCGCAGGAGU
(((((.((.(((.....))).)).)))))..........((((((......))))))(((((((.((((.....(-((((.....)))))....)))).))))))). ( -35.30)
>DroPse_CAF1 99623 94 - 1
GCCCUCGAUCUGUUCUGCGGUUCUGGGGCGACACUUGUG----CAUCAUUUUGGUGACUUUUGCUCUUC-CCA---UCCCGCAGGGUCAAUGGAAUUG-----GGGG
.(((((((((((..((((((...(((((.((((...((.----((((.....))))))...)).)).))-)))---..))))))..)....)).))))-----)))) ( -35.70)
>DroSec_CAF1 2069 104 - 1
GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGA---UGGCAGAGGGUCACUGGAAUUUCGCAGGAGG
(((((.((.(((.....))).)).)))))....(((((.........((((..(((((((((((.(.......---.)))))).))))))..))))...)))))... ( -33.20)
>DroSim_CAF1 2148 104 - 1
GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGA---UGGCAGAGGGUCACUGGAAUUUCGCAGGAGG
(((((.((.(((.....))).)).)))))....(((((.........((((..(((((((((((.(.......---.)))))).))))))..))))...)))))... ( -33.20)
>DroYak_CAF1 2490 107 - 1
GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCACUAUGAAACGCUGGCAGAGGGUCACUAAAAUUGGUCAGUAAC
(((((.((.(((.....))).)).))))).....((((...((((..(((((((((((((((((.(...........)))))).))))))))))))))))..)))). ( -31.60)
>DroPer_CAF1 101661 94 - 1
GCCCUCGAUCUGUUCUGCGGUUCUGGGGCGACACUUGUG----CAUCAUUUUGGUGACUUUUGCUCUUC-CCA---UCCCGCAGGGUCAAUGGAAUUG-----GGGG
.(((((((((((..((((((...(((((.((((...((.----((((.....))))))...)).)).))-)))---..))))))..)....)).))))-----)))) ( -35.70)
>consensus
GCCCUCGAUCUUUCUCUGGGUUCUGGGGCGACACUUGCAUCAUCAUCAUUUUGGUGACUUUUGCUCUAUGAGA___UGGCAGAGGGUCACUGGAAUUGCGCAGGAGG
(((((.((.(((.....))).)).)))))..................(((((((((((((((((..............))).))))))))))))))........... (-25.07 = -24.79 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:20 2006