Locus 5368

Sequence ID X_DroMel_CAF1
Location 13,966,668 – 13,966,766
Length 98
Max. P 0.810831
window8713

overview

Window 3

Location 13,966,668 – 13,966,766
Length 98
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 73.51
Mean single sequence MFE -11.50
Consensus MFE -8.92
Energy contribution -9.03
Covariance contribution 0.11
Combinations/Pair 1.09
Mean z-score -1.16
Structure conservation index 0.78
SVM decision value 0.65
SVM RNA-class probability 0.810831
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13966668 98 - 22224390
UCAUAUGUAUGUAUCUAUGGCAUGGAAUGGACAAAGCCCAUUCCCAUUCC------CAUUCCCAAUCCUAUUCCCAUUCCCAUUCUCGAUCCCAAGUCCAUUUC
................((((.(((((((((.......))))).))))..)------)))............................................. ( -11.70)
>DroSim_CAF1 26 90 - 1
--A------------UAUGGCAUAGAGUGGACAAAGCCCAUUGCCAUUCCCAUUUCCAUUACCAAUCCUAUUCGCAUUCCCAUUCUCGAUCCCCAGUUCAUUUC
--.------------.((((....((((((.(((......)))))))))......))))............................................. ( -10.10)
>DroYak_CAF1 211 94 - 1
--A--------UAUCUAUGGCAUGGAAUGGACAAAGCCCAUUCCCAUUCCCAUUCCCAGUGCAAGUCCCAAUCCCAAUUCCAAUUCCAAACCCAAGUCCAUUUC
--.--------........(((((((((((...................)))))))..)))).......................................... ( -12.71)
>consensus
__A________UAUCUAUGGCAUGGAAUGGACAAAGCCCAUUCCCAUUCCCAUU_CCAUUACCAAUCCUAUUCCCAUUCCCAUUCUCGAUCCCAAGUCCAUUUC
..................((.(((((((((.......))))).)))).))...................................................... ( -8.92 =  -9.03 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:18 2006