Locus 533

Sequence ID X_DroMel_CAF1
Location 1,525,635 – 1,525,742
Length 107
Max. P 0.524727
window840

overview

Window 0

Location 1,525,635 – 1,525,742
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 70.51
Mean single sequence MFE -33.55
Consensus MFE -14.94
Energy contribution -15.08
Covariance contribution 0.14
Combinations/Pair 1.35
Mean z-score -1.63
Structure conservation index 0.45
SVM decision value -0.02
SVM RNA-class probability 0.524727
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1525635 107 - 22224390
CAGCAGAGCACUCGCUGUUAAGUCUGAUGUUAA-AUGCUCUGUUCGCCGCGGGCAAUCGAC-UUAUCGAUAC-------AGUGACAUCGUUUG-CACUGCGAUUCGAUAGU---UGGCAA
.(((((((((...((.((((....))))))...-.)))))))))....((.(((.(((((.-..((((...(-------((((.((.....))-)))))))))))))).))---).)).. ( -32.60)
>DroPse_CAF1 4157 91 - 1
AAUC---GCAGCUGUUGUUAGUUUUGGUGUUACACAGCACUGAUUCCUU-----CAUCGAUAUUAUCGAUGC-------AACAA-GU-------------GAUUCGCUACUGAAUCGAAU
..((---...(((((((...(..(..(((((....)))))..)..)...-----(((((((...))))))))-------))).)-))-------------((((((....)))))))).. ( -22.10)
>DroSec_CAF1 15059 107 - 1
UAGCAGAGCACUCGCUGUUAAGUCUGAUGUUAA-GUGCUCUGUUCGGCGCGGGCAAUCGAC-UUAUCGAUAC-------AAUGAAGUCGUUGG-CACUGCGAUUCGAUAGU---UGGAGA
..((((((((((.(..((((....))))..).)-)))))))))(((.(((((((.(((((.-...))))).(-------((((....))))))-).)))))...)))....---...... ( -36.10)
>DroSim_CAF1 16334 107 - 1
UAGCAGAGCACUUGCUGUUAAGUCUGAUGUUAA-GUGCUCUGUUCGGCGCGGGCAAUCGAC-UUAUCGAUAC-------AGUGAAGUCGUUGG-CACUGCGACUCGAUAGU---UGGAGA
.(((((((((((((..((((....))))..)))-))))))))))...(((((((...((((-((..(.....-------.)..))))))...)-).))))).(((.(....---).))). ( -40.80)
>DroEre_CAF1 15138 112 - 1
UAGCAGAGCAGUCGCUGUUAAGUCU---GUUAA-GUGCUCUGUUCGCCGUGGACAAUCGGC-UCAUCGAUACGCAUAACAGUGCCAUCGUUGGACACUGCGAUGCGAUAGU---UGUAAG
((((.((((((.((((.........---....)-)))..))))))((((........))))-.........(((((..((((((((....))).)))))..)))))...))---)).... ( -37.32)
>DroYak_CAF1 16666 112 - 1
UAGCAGAGCACUCGCUGUUAGGACU---GUUAA-GUGCUCUGUUCACCGCGGGCAAUAGAC-UUAUCGAUACGCGCAAUAGUGUCAUCGUCGGACACCGCUAUACGAUAGU---UGGAAA
.(((((((((((.((.((....)).---))..)-))))))))))..(((....)....(((-(.(((((((.(((.....(((((.......))))))))))).)))))))---)))... ( -32.40)
>consensus
UAGCAGAGCACUCGCUGUUAAGUCUGAUGUUAA_GUGCUCUGUUCGCCGCGGGCAAUCGAC_UUAUCGAUAC_______AGUGACAUCGUUGG_CACUGCGAUUCGAUAGU___UGGAAA
.((((((((((.......................))))))))))...........(((((.....)))))...........(((.(((((........)))))))).............. (-14.94 = -15.08 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:06 2006