Locus 5319

Sequence ID	X_DroMel_CAF1
Location	13,906,528 – 13,906,642
Length	114
Max. P	0.864396

overview

Window 9

Location	13,906,528 – 13,906,642
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	93.67
Mean single sequence MFE	-29.88
Consensus MFE	-26.96
Energy contribution	-27.27
Covariance contribution	0.31
Combinations/Pair	1.03
Mean z-score	-1.80
Structure conservation index	0.90
SVM decision value	0.84
SVM RNA-class probability	0.864396
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13906528 114 - 22224390
UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUUGAUGUUUGAUGUUUGAU
.((((((.((.(((((((((((((((.(((..(.((..(((....)))..)).)..))))))).))))((((..(((((.....)))))..))))))).)))).)).)))))). ( -32.40)
>DroSec_CAF1 6967 107 - 1
UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU-------GAUGUUUGAU
.(((((((((((((.((....))..))))))).....((((((((.............)))))...((((((..(((((.....)))))..))))))-------))))))))). ( -29.82)
>DroSim_CAF1 28753 107 - 1
UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU-------GAUGUUUGAU
.(((((((((((((.((....))..))))))).....((((((((.............)))))...((((((..(((((.....)))))..))))))-------))))))))). ( -29.82)
>DroYak_CAF1 17072 107 - 1
UUCAAAACUUUGACACAACUUUGCAGUCAGAGUGGUAAUCGCAGUUGAAGUUGAAGUCGCGACUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU-------GAUGUUUGAU
((((..((((..((...((((((....)))))).((....)).))..))))))))((((.(((...((((((..(((((.....)))))..))))))-------...))))))) ( -27.50)
>consensus
UUCAAAUCUUUGACACAACUUUGCCGUCAGAGUGGAAGUCGCCGUUGAAGUUGAAGUUGCGGCUAAAGACGUUGAAAUGUUGCACAUUUUGAUGUUU_______GAUGUUUGAU
.(((((((((((((.((....))..)))))))....((((((..((........))..))))))..((((((..(((((.....)))))..))))))..........)))))). (-26.96 = -27.27 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:47 2006