Locus 5274

Sequence ID X_DroMel_CAF1
Location 13,805,602 – 13,805,714
Length 112
Max. P 0.713586
window8540

overview

Window 0

Location 13,805,602 – 13,805,714
Length 112
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 76.33
Mean single sequence MFE -18.72
Consensus MFE -16.34
Energy contribution -16.90
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -0.70
Structure conservation index 0.87
SVM decision value 0.38
SVM RNA-class probability 0.713586
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13805602 112 - 22224390
AUUUUAUAUUUGUCUCGUUAUGGCAUUU-CCCCUGACCCUUUCCACUCCCCCCCCCUCCCCCU--CCCCAGUCCAUAUAAAAAACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG
................((((((((((((-(..(((............................--...)))(((((................))))))))))))))))))..... ( -21.67)
>DroEre_CAF1 114627 95 - 1
AUUUUAUAUUUGUCUCGUUAUGAAAUUU-CCCCCGCCCC-UGCCACUU----------CUG----CCCAAGUCC----AAAACACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG
..........((((.((.(((.......-..........-....((((----------...----...))))..----......(((((......)))))))).)).)))).... ( -13.30)
>DroYak_CAF1 124134 111 - 1
AUUUUAUAUUUGUCUUGUAAUGGCAUAUACCCCCGCCCC-CGCCCCCG---CUCCUUGCUGCUCCCCCUUGUCCGUAUAAAACACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG
...............(((.(((((((((((....((...-.))....(---(.....))...............))))).....(((((......))))).)))))).))).... ( -21.20)
>consensus
AUUUUAUAUUUGUCUCGUUAUGGCAUUU_CCCCCGCCCC_UGCCACUC___C_CC_U_CUGCU__CCCAAGUCC_UAUAAAACACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG
................((((((((((........((.....)).........................................(((((......)))))))))))))))..... (-16.34 = -16.90 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:45 2006