| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,790,052 – 13,790,153 |
| Length | 101 |
| Max. P | 0.564846 |
| Location | 13,790,052 – 13,790,153 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 63.30 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.00 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13790052 101 - 22224390 GUU---UAUCCGGUUGCGAUUUGCCGGC---UUCAACCGUUUCG---GGUUUCUUGGUUCGAUUGCAUUUACCCGGA------UUCCGUAACCGUAAGCUCUUCUUCAUGUCCACA- (((---((..((((((((......(((.---.....))).((((---(((......((......))....)))))))------...))))))))))))).................- ( -26.80) >DroEre_CAF1 98977 104 - 1 GUUUUUUAUCCGGCUGCAAUUUGCCGGC---UUCAACGGCUUCA---GUUUUCUUGGUUCGAUUGCCUUUGCCCAGA------AUCCGCAUCCGUGCGCACUUCUUUAUGUCCACA- ...........((.(((.....((((..---.....))))....---(..((((.(((............))).)))------)..)))).))(((.(((........))).))).- ( -24.50) >DroYak_CAF1 107787 104 - 1 GUU---UAUCCGGUUGCAAUUUGCCCGCAGUUUCUGCGGCAUCA---GUUUUCUUGGUUCGAUUGCAUUUGCCCGGA------UUUCGCAUCCGUGCGCUCUUCUUCAUAUCCACA- ...---.((((((.(((((((.(((.((((...)))))))((((---(.....)))))..))))))).....)))))------)..((((....))))..................- ( -27.00) >DroAna_CAF1 107783 102 - 1 ACU---UUUCCGCCAGCGGCUUCUCCGC---CUCCAGCAUCUCGUUGAGAUUCUUGG---------ACUUGCCCAGGCGACACUUUCCCUGGCGCCGGCGCCCCUUCCUGCUCGCAA ...---.....((.(((((......(((---((((((.(((((...)))))..))))---------)...(((((((.((.....))))))).)).)))).......))))).)).. ( -34.42) >consensus GUU___UAUCCGGCUGCAAUUUGCCCGC___UUCAACCGCUUCA___GGUUUCUUGGUUCGAUUGCAUUUGCCCAGA______UUCCGCAUCCGUGCGCUCUUCUUCAUGUCCACA_ ..........(((((((.....((((..........))))...........(((.(((............))).)))..........)))))))....................... (-12.38 = -12.00 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:41 2006