Locus 5267

Sequence ID X_DroMel_CAF1
Location 13,779,777 – 13,779,873
Length 96
Max. P 0.561756
window8531

overview

Window 1

Location 13,779,777 – 13,779,873
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 98.44
Mean single sequence MFE -21.88
Consensus MFE -19.67
Energy contribution -19.93
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.90
SVM decision value 0.06
SVM RNA-class probability 0.561756
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13779777 96 - 22224390
CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU
.(((((((((.(((......))))))))))))............((((..(((((.....))))).))))...((((.((((...)))).)))).. ( -21.00)
>DroSec_CAF1 87183 96 - 1
CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU
.(((((((((.(((......))))))))))))............((((..(((((.....))))).))))...((((.((((...)))).)))).. ( -21.00)
>DroSim_CAF1 93594 96 - 1
CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU
.(((((((((.(((......))))))))))))............((((..(((((.....))))).))))...((((.((((...)))).)))).. ( -21.00)
>DroYak_CAF1 96527 96 - 1
CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUGGCUGUUGUUGUUACGGCGAUU
.(((((((((.(((......)))))))))))).(((.....(((((....(((((.....))))).....)))))(((((.......)))))))). ( -24.50)
>consensus
CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU
.(((((((((.(((......)))))))))))).......(((..((((..(((((.....))))).)))).....((.(((.....))).))))). (-19.67 = -19.93 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:38 2006