Locus 5230

Sequence ID X_DroMel_CAF1
Location 13,649,944 – 13,650,038
Length 94
Max. P 0.508298
window8477

overview

Window 7

Location 13,649,944 – 13,650,038
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 90.56
Mean single sequence MFE -30.10
Consensus MFE -23.44
Energy contribution -24.04
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.78
SVM decision value -0.05
SVM RNA-class probability 0.508298
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13649944 94 - 22224390
GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGAGCUUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAAUGGUUUUGC
...(((.(((((......(((.......))).((.(((((((((((((..((((....))))..)))).)))))))))))....))))).))). ( -28.80)
>DroSec_CAF1 2260 94 - 1
GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUAUCGACGCCAGCAGAAAUGGUUGUGC
(((((..(((((......(((.......))).((.(((((((((((((((........)))))).....)))))))))))....)))))))))) ( -35.10)
>DroSim_CAF1 2245 94 - 1
GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUAUCGACGCCAGCAGAAAUGCUUGUGC
(((((((((.........)))).............(((((((((((((((........)))))).....)))))))))(((....))).))))) ( -33.80)
>DroEre_CAF1 3256 86 - 1
GCACAGUCCCAUAUAAACGCACAUUAAUUG---CCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAACGGC-----
........((........(((.......))---)((((((((((((((((........)))))).....)))))))))).......)).----- ( -24.70)
>DroYak_CAF1 2387 86 - 1
GCACAGUGCCAUAUAAACGCACAUUGAUUG---CCUGGCGUUGGGGCCUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAACGGC-----
((...((((.........)))).....(((---(.(((((((((((((..((((....))))..)))).))))))))))))).....))----- ( -28.10)
>consensus
GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAAUGGUU_UGC
.....((((.........))))............((((((((((((((((........)))))).....))))))))))............... (-23.44 = -24.04 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:50 2006