| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,587,236 – 13,587,343 |
| Length | 107 |
| Max. P | 0.512703 |
| Location | 13,587,236 – 13,587,343 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 90.24 |
| Mean single sequence MFE | -13.42 |
| Consensus MFE | -11.34 |
| Energy contribution | -11.67 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13587236 107 - 22224390 GCGCAAUAUAAAAAGCACUCAAAAAACAAA---AACAACACAUGAAAACACAAAAAAAAAAACAACACAUGCGGCUCU--UUUUUGCACGUUAUCUUUGUUUUCAUUUGUAU ((............))..............---....(((.(((((((((....................(((((...--.....)).)))......))))))))).))).. ( -13.27) >DroSec_CAF1 2986 104 - 1 GCGCAAUAUAAAAAGCACUCACAAACCAAC---AACAACACAUGAAAACACAAA-----AAACAACACAUGCGGCAUUUAUUUUUGCACGUUAUCUUUGUUUUCAUUUGCAU ((((..........))..............---........(((((((((....-----...........((((((........))).)))......)))))))))..)).. ( -13.50) >DroSim_CAF1 3153 107 - 1 GCGCAAUAUAAAAAGCACUCACAAAACAACAACAACAACACAUGAAAACACAAA-----AAACAACACAUGCGGCAUUUAUUUUUGCACGUUAUCUUUGUUUUCAUUUGCAU ((((..........)).........................(((((((((....-----...........((((((........))).)))......)))))))))..)).. ( -13.50) >consensus GCGCAAUAUAAAAAGCACUCACAAAACAAC___AACAACACAUGAAAACACAAA_____AAACAACACAUGCGGCAUUUAUUUUUGCACGUUAUCUUUGUUUUCAUUUGCAU ((............))......................((.(((((((((....................((((((........))).)))......))))))))).))... (-11.34 = -11.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:07 2006