| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,561,383 – 13,561,475 |
| Length | 92 |
| Max. P | 0.997705 |
| Location | 13,561,383 – 13,561,475 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 91.29 |
| Mean single sequence MFE | -11.90 |
| Consensus MFE | -11.19 |
| Energy contribution | -11.00 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.83 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.91 |
| SVM RNA-class probability | 0.997705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13561383 92 - 22224390 CAUGAGAUUCCACUAAUAAACAAAAACAAAAAAAAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((((((((((................................(.......)....(((((((((....)))))))))..))))))))))) ( -14.60) >DroSec_CAF1 16315 83 - 1 CAUGCGAUUCCACUAAUAAACAAA---------AAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((.(((((((............---------...........(.......)....(((((((((....)))))))))..))))))).))) ( -11.00) >DroSim_CAF1 8747 84 - 1 CAUGCGAUUCCACUAAAAAACAAA--------AAAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((.(((((((............--------............(.......)....(((((((((....)))))))))..))))))).))) ( -11.00) >DroYak_CAF1 16127 82 - 1 CAUGCGAUUCCACUAAAAAA-AA---------AAAACACACCCACAAACACAGACAAUUAUAUAGCUCUAGUUGUAUAAAAUGGAAUUUUAU .(((.(((((((........-..---------............(.......)....(((((((((....)))))))))..))))))).))) ( -11.00) >consensus CAUGCGAUUCCACUAAAAAACAAA________AAAACACACCCACAAACACAGACAAUUAUAUAGCUAUAGUUAUAUAAAAUGGAAUUUUAU .(((.(((((((................................(.......)....(((((((((....)))))))))..))))))).))) (-11.19 = -11.00 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:01 2006