Locus 5151

Sequence ID X_DroMel_CAF1
Location 13,433,345 – 13,433,437
Length 92
Max. P 0.614079
window8363

overview

Window 3

Location 13,433,345 – 13,433,437
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -24.57
Consensus MFE -16.42
Energy contribution -16.95
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.67
SVM decision value 0.16
SVM RNA-class probability 0.614079
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13433345 92 - 22224390
UA---AAA---AA--AAACC-------AAAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAAACCCGCGAGGAGACGUAAGUA
..---...---..--.....-------....(((((......)))))(((((.(((..((((.....))))-...))).))))).....((....))..((....)). ( -24.50)
>DroPse_CAF1 39761 94 - 1
CUGUUAUA---AU--UAAA--------CGACUCCGUUUAAUUACGAACUCCAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA
((((..((---((--((((--------((....))))))))))..).((((...((((((((........)-)).)))))...))))..)))...(....)....... ( -26.90)
>DroGri_CAF1 19188 105 - 1
UUGUUUUUUGCAC--AAAACCAUACACGUAAAUCGUUUAAUUACGAACACGUCAGCAGUUCCGAGGAGGAG-GAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA
......(((((..--....((...........((((......))))...((.((((..((((.....))))-...)))).)).))..........(....)))))).. ( -20.50)
>DroSim_CAF1 27858 91 - 1
UC---GAA---AA--AAAA--------UUAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAAACCCGCGAGGAGACGUAAGUA
..---...---..--....--------....(((((......)))))(((((.(((..((((.....))))-...))).))))).....((....))..((....)). ( -24.50)
>DroYak_CAF1 38617 94 - 1
UC---AAA---AAAAAAAAC-------UGAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAGACCCGCGAGGAGACGUAAGUA
..---...---.........-------....(((((......)))))(((((.(((..((((.....))))-...))).))))).....((....))..((....)). ( -24.50)
>DroPer_CAF1 42111 95 - 1
CUGUUAUA---AU--UAAA--------CGACUCCGUUUAAUUACGAACUCCAAAGCAGCUCCGAGGAGGAGGGAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA
...(..((---((--((((--------((....))))))))))..).((((.......((((.....))))...((((........)))).....))))((....)). ( -26.50)
>consensus
UU___AAA___AA__AAAA________CGAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG_GAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA
........................................(((((..(((((.(((..((((.....))))....))).)))))....((.....))...)))))... (-16.42 = -16.95 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:08 2006