Locus 5118

Sequence ID X_DroMel_CAF1
Location 13,367,127 – 13,367,246
Length 119
Max. P 0.690363
window8320

overview

Window 0

Location 13,367,127 – 13,367,246
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 92.72
Mean single sequence MFE -33.45
Consensus MFE -26.09
Energy contribution -26.34
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.78
SVM decision value 0.33
SVM RNA-class probability 0.690363
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13367127 119 - 22224390
CUGGUAUUCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGAGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA
.((((((((((((((..(((((((..(((((....)))))..))))))....)..))))))))................((((.(((((.(((....)))..))))).)))))))))). ( -34.10)
>DroSec_CAF1 13163 119 - 1
CUGGUAUCCAUAGCACCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA
..........((((((((((((((..(((((....)))))..))))))...((((......))))...........)))((((.(((((.(((....)))..))))).)))).))))). ( -34.00)
>DroSim_CAF1 12919 118 - 1
CUGGU-UCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA
(((..-..(((((((..(((((((..(((((....)))))..))))))....)..))))))).((......)).)))(.((((.(((((.(((....)))..))))).)))).)..... ( -32.70)
>DroYak_CAF1 14268 112 - 1
CUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUACUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGC-------AAGCUUGUUUAAUAGUGCCUAGUAUGUGCUAA
..(((((.(((((((..((((((((.(((((....))))).)))))))....)..)))))))......(((.((((((..-------...)))))).))).)))))((((....)))). ( -33.00)
>consensus
CUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA
..(((((.(((((((..(((((((..(((((....)))))..))))))....)..)))))))......(((.(((((..............))))).))).)))))((((....)))). (-26.09 = -26.34 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:30 2006