Locus 5116

Sequence ID X_DroMel_CAF1
Location 13,361,060 – 13,361,164
Length 104
Max. P 0.893326
window8317

overview

Window 7

Location 13,361,060 – 13,361,164
Length 104
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 71.05
Mean single sequence MFE -28.17
Consensus MFE -13.78
Energy contribution -12.35
Covariance contribution -1.43
Combinations/Pair 1.36
Mean z-score -2.31
Structure conservation index 0.49
SVM decision value 0.98
SVM RNA-class probability 0.893326
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13361060 104 + 22224390
CCUUGCGAGUGUUUGUAUUCCCAUCUAGGCAUUCCUAAAGGAAUCCUUAGGAC-UUUAUACCGAAGGGUAUUGUGUGUGAGGAUUUGUGAGUAUCUGAAUAUCUG
.((..(((((.((..(((.....((((((.(((((....))))).))))))((-...(((((....))))).)))))..)).)))))..)).............. ( -30.80)
>DroSec_CAF1 6596 83 + 1
CCUCGAGGAUUUCUGG-GGACUAUCUAGGGAUUCC-----------UUAGGGUUUUUGUACUGAAGGUUA--GUGUGUGAGAAUUUGCGAGUAUC--------UG
.(((((((((..((((-(.....)))))..).)))-----------)).(((((((..(((.........--..)))..)))))))..)))....--------.. ( -22.00)
>DroSim_CAF1 6596 94 + 1
ACUCGAGGAUUUCUGA-GGACUAUCUAGGGAUUCCUUAAGGAAUCCUUAGGGUUUUUGUACUGAAGGUUA--GUGUGUGAGGAUUUGCGAGUAUC--------UG
(((((..((((..(((-(((((..(((((((((((....)))))))))))))))))).((((((...)))--)))...)..))))..)))))...--------.. ( -31.70)
>consensus
CCUCGAGGAUUUCUGA_GGACUAUCUAGGGAUUCCU_AAGGAAUCCUUAGGGUUUUUGUACUGAAGGUUA__GUGUGUGAGGAUUUGCGAGUAUC________UG
.((((.(((((((((..........)))))))))...............((((((((((((.............)))))))))))).)))).............. (-13.78 = -12.35 +  -1.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:27 2006