| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,347,504 – 13,347,594 |
| Length | 90 |
| Max. P | 0.583577 |
| Location | 13,347,504 – 13,347,594 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 97.04 |
| Mean single sequence MFE | -29.23 |
| Consensus MFE | -26.43 |
| Energy contribution | -27.43 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13347504 90 - 22224390 ACUGGUUGUGUUUCUGGUCCAGGUCCUGUGUCCUGUUCCUACUCCAGCCUUGGAUCUCCCGGAGCCUGGCAGGCUCUGCCUUAGACUUUA ...(((((.(.....((..((((........))))..))....))))))..((....))(((((((.....)))))))............ ( -27.20) >DroSec_CAF1 9365 90 - 1 ACUGGUUGUGUUUCUGGUCCAAGGCCUGUGUCCUGUUCCUACUCCAGCCAUGGAUCUCCCGGAUCCUGGCAGGCUCUGCCUUAGACUUUA ...............((((.(((((..(.(.(((((....))....((((.(((((.....))))))))))))).).))))).))))... ( -28.00) >DroSim_CAF1 10797 90 - 1 ACUGGUUGUGUUUCUGGUCCAGGGCCUGUGUCCUGUUCCUACUCCAGCCAUGGAUCUCCCGGAUCCUGGCAGGCUCUGCCUUAGACUUUA ..((((((.(.....((..((((((....))))))..))....))))))).(((((.....))))).(((((...))))).......... ( -32.50) >consensus ACUGGUUGUGUUUCUGGUCCAGGGCCUGUGUCCUGUUCCUACUCCAGCCAUGGAUCUCCCGGAUCCUGGCAGGCUCUGCCUUAGACUUUA ...(((((.(.....((..((((((....))))))..))....))))))..(((((.....))))).(((((...))))).......... (-26.43 = -27.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:20 2006