Locus 5092

Sequence ID X_DroMel_CAF1
Location 13,312,843 – 13,312,956
Length 113
Max. P 0.663770
window8283

overview

Window 3

Location 13,312,843 – 13,312,956
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.81
Mean single sequence MFE -28.39
Consensus MFE -16.47
Energy contribution -17.94
Covariance contribution 1.47
Combinations/Pair 1.16
Mean z-score -2.67
Structure conservation index 0.58
SVM decision value 0.27
SVM RNA-class probability 0.663770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13312843 113 + 22224390
--CUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGAUCGCUGAGCAACCUUUGACCUUAUCGACUCUCUUGG----UCGGGCGCAAUUAUCACCCCA
--..(((..(((((...-.)))))..)))....((((.(((((..((.(((......))).))..))))).....((((..............))----))))))............... ( -32.84)
>DroSec_CAF1 25637 110 + 1
--CUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGACCGCUGAGCAACCUUUGACCUUAUCGACUCUC--GG----UCGGGCGCAAUUAUCACCCC-
--..(((..(((((...-.)))))..)))....((((.(((((..((....((....))..))..))))).....((((............--))----))))))..............- ( -30.80)
>DroSim_CAF1 17862 111 + 1
--CUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGACCGCUGAGCAACCUUUGACCUUAUCGACUCUC--GG----UCGGGCGCAAUUAUCACCCCA
--..(((..(((((...-.)))))..)))....((((.(((((..((....((....))..))..))))).....((((............--))----))))))............... ( -30.80)
>DroEre_CAF1 17175 111 + 1
--CUGAACUUUGGCCCU-UGCCAAUUUUCUCUGGCCCAUUGUUUGGCUAUUUUUUUGGUCCGCUGAGCAACCUUUGACCUUAUCGACUCUU--GG----UCGGGCGCAAUUAUCACCCCA
--..(((..(((((...-.)))))..)))..((((((.(((((..((..............))..))))).....((((............--))----)))))).))............ ( -30.14)
>DroYak_CAF1 16589 113 + 1
CUCUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGGCCAUUGUUUGGCUAUUUCUUUGGUGCGCUGAGCAACCUUUGACCUUAUCGACUCUG--GC----UUGGGCGCAAUUAUCACCCCA
....(((..(((((...-.)))))..)))...((((((.....))))))........((((.(..(((.....((((.....)))).....--))----)..)))))............. ( -31.90)
>DroPer_CAF1 73795 108 + 1
--CUGAACUUUUCCACUUUUCCACUUUUCCUCUUUCUAUUGU--GGAAAUUCCC------AGCCAUAUCCCGUUUGACCUUAUCGACUUUU--GUAAGCCUCGGCACAAUUAUCGCCCCA
--(((....(((((((........................))--)))))....)------)).....................(((...((--((..((....))))))...)))..... ( -13.86)
>consensus
__CUGAACUUUGGCUCU_UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGACCGCUGAGCAACCUUUGACCUUAUCGACUCUC__GG____UCGGGCGCAAUUAUCACCCCA
....(((..(((((.....)))))..)))....((((.(((((((((..............)))))))))...((((.....))))...............))))............... (-16.47 = -17.94 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:57 2006